Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4191

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4191: 12559 - HMMPfam-GAF domain-PF13492,SMART-Domain present in phytochromes and cGMP-specific phosphodiesterases.-SM00065,SUPERFAMILY--SSF55781, at 1577010 to 1579239 12559 mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1579448 to 1580118 12560

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,576,067 - -0.1
1,576,091 - 0.0
1,576,126 + -0.3
1,576,177 + -0.2
1,576,220 - -0.6
1,576,222 - 0.8
1,576,230 + -0.4
1,576,234 + 1.5
1,576,302 - 0.5
1,576,343 + -0.4
1,576,349 + 0.1
1,576,351 - 1.0
1,576,356 + -0.1
1,576,364 - -0.5
1,576,365 - 0.2
1,576,369 + 0.1
1,576,380 + 1.0
1,576,389 - -0.6
1,576,390 - -0.8
1,576,429 + 0.8
1,576,436 - -1.2
1,576,488 + 0.5
1,576,496 - 0.1
1,576,555 - 0.4
1,576,559 - 0.0
1,576,577 - 1.5
1,576,582 + -0.7
1,576,584 - 0.3
1,576,586 + -0.3
1,576,587 + 0.5
1,576,588 + 0.5
1,576,589 + 1.3
1,576,590 - 0.2
1,576,590 - 0.0
1,576,592 - 0.0
1,576,599 + -0.2
1,576,600 - 0.0
1,576,600 + 1.3
1,576,601 + -0.5
1,576,607 - -0.2
1,576,608 + -0.9
1,576,608 + -0.6
1,576,609 - -1.8
1,576,618 + 0.2
1,576,644 - -0.1
1,576,645 - 0.4
1,576,646 + 1.1
1,576,647 - 1.3
1,576,651 + -1.3
1,576,667 - -1.7
1,576,670 + -0.6
1,576,683 - -2.0
1,576,691 + 1.0
1,576,697 + -0.4
1,576,710 - 0.1
1,576,716 - -0.9
1,576,721 - -0.9
1,576,723 - -0.6
1,576,752 + 0.5
1,576,757 + -1.8
1,576,766 + -0.1
1,576,780 - -0.1
1,576,785 + 0.3
1,576,788 - -0.5
1,576,791 - -0.3
1,576,817 - 0.1
1,576,860 - -0.2
1,576,874 + -0.2
1,576,883 + -0.2
1,576,895 - 1.5
1,576,901 - -0.4
1,576,918 - -0.3
1,576,926 - 0.7
1,577,039 - -0.8
1,577,082 + 0.6
1,577,083 + -1.0
1,577,083 - -0.1
1,577,099 - -0.6
1,577,126 - 0.0
1,577,184 + -0.8
1,577,198 + 0.1
1,577,325 + 12559 mRNA_4191 0.14 -0.3
1,577,770 + 12559 mRNA_4191 0.34 -1.6
1,577,958 + 12559 mRNA_4191 0.43 1.5
1,578,031 - 12559 mRNA_4191 0.46 0.2
1,578,339 - 12559 mRNA_4191 0.60 -0.0
1,578,378 + 12559 mRNA_4191 0.61 -0.8
1,578,380 - 12559 mRNA_4191 0.61 -0.5
1,578,398 - 12559 mRNA_4191 0.62 -0.4
1,578,524 - 12559 mRNA_4191 0.68 -1.6
1,578,529 - 12559 mRNA_4191 0.68 -1.2
1,578,533 + 12559 mRNA_4191 0.68 -1.1
1,578,971 + 12559 mRNA_4191 0.88 0.5
1,579,205 - -0.6
1,579,228 - -0.1
1,579,233 + 0.6
1,579,248 - -0.2
1,579,381 - -0.2
1,579,407 + 0.0
1,579,502 - -1.3
1,579,543 + 12560 mRNA_4192 0.14 0.2
1,579,681 - 12560 mRNA_4192 0.35 0.0