Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4130

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4129: 12497 - K03949 NDUFA5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5, at 1418367 to 1418907 12497 mRNA_4130: 12498 - K14812 NGL2 RNA exonuclease NGL2, at 1419173 to 1421594 12498 mRNA_4131: 12499 - KOG3783 Uncharacterized conserved protein, at 1421830 to 1424236 12499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,418,281 - 2.1
1,418,313 - 1.2
1,418,317 - -0.1
1,418,320 - 1.2
1,418,320 - -0.4
1,418,322 + -0.0
1,418,326 - 0.0
1,418,326 + 1.5
1,419,043 + -0.3
1,419,045 + -0.6
1,419,315 - -0.2
1,419,775 + 12498 mRNA_4130 0.25 1.2
1,420,214 - 12498 mRNA_4130 0.43 0.6
1,420,225 + 12498 mRNA_4130 0.43 0.2
1,420,264 - 12498 mRNA_4130 0.45 -0.9
1,420,265 + 12498 mRNA_4130 0.45 -1.3
1,420,515 + 12498 mRNA_4130 0.55 0.3
1,420,765 + 12498 mRNA_4130 0.66 0.3
1,420,789 + 12498 mRNA_4130 0.67 0.0
1,420,806 + 12498 mRNA_4130 0.67 0.2
1,421,134 - 12498 mRNA_4130 0.81 0.2
1,421,360 - -0.7
1,421,364 - 0.7
1,421,401 - -0.6
1,421,407 + -0.7
1,421,521 + 0.7
1,421,528 + 1.2
1,421,533 - -0.1
1,421,678 - -0.3
1,421,689 + 0.1
1,421,713 + 0.2
1,421,953 + -0.6
1,422,385 - 12499 mRNA_4131 0.23 2.7
1,422,385 - 12499 mRNA_4131 0.23 0.1
1,422,386 + 12499 mRNA_4131 0.23 -0.4
1,422,389 + 12499 mRNA_4131 0.23 -0.9
1,422,396 + 12499 mRNA_4131 0.24 -0.4