Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3974

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3973: 12341 - HMMPfam-Flavin reductase like domain-PF01613,SMART-Flavin reductase like domain-SM00903,SUPERFAMILY--SSF50475, at 1032513 to 1033671 12341 mRNA_3974: 12342 - K02350 POLZ1, rev3 DNA polymerase zeta, at 1033703 to 1040837 12342 mRNA_3975: 12343 - KOG1938 Protein with predicted involvement in meiosis (GSG1), at 1041563 to 1046675 12343

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,032,703 - 12341 mRNA_3973 0.16 0.1
1,032,735 + 12341 mRNA_3973 0.19 -0.3
1,033,051 + 12341 mRNA_3973 0.46 -0.3
1,033,210 + 12341 mRNA_3973 0.60 -1.5
1,033,224 + 12341 mRNA_3973 0.61 -0.4
1,033,445 - 12341 mRNA_3973 0.80 -0.3
1,033,607 - -0.4
1,033,760 - -0.2
1,033,780 + 0.1
1,033,805 + -1.4
1,033,938 + 0.1
1,034,015 + 0.6
1,034,074 - 0.6
1,034,077 + 0.4
1,034,082 + -0.7
1,034,373 + -0.9
1,035,241 - 12342 mRNA_3974 0.22 0.2
1,035,446 + 12342 mRNA_3974 0.24 -0.3
1,035,719 + 12342 mRNA_3974 0.28 -0.5
1,035,949 - 12342 mRNA_3974 0.31 -0.3
1,035,999 + 12342 mRNA_3974 0.32 -1.2
1,036,000 + 12342 mRNA_3974 0.32 -0.7
1,036,144 - 12342 mRNA_3974 0.34 -0.6
1,036,621 + 12342 mRNA_3974 0.41 -0.1
1,036,889 - 12342 mRNA_3974 0.45 1.8
1,036,907 + 12342 mRNA_3974 0.45 -1.0
1,037,062 - 12342 mRNA_3974 0.47 -0.2
1,037,216 - 12342 mRNA_3974 0.49 -0.1
1,037,891 - 12342 mRNA_3974 0.59 -1.0
1,037,928 + 12342 mRNA_3974 0.59 0.9
1,038,193 - 12342 mRNA_3974 0.63 0.0
1,038,227 + 12342 mRNA_3974 0.63 -0.2
1,038,356 - 12342 mRNA_3974 0.65 -0.8
1,038,364 + 12342 mRNA_3974 0.65 0.1
1,038,539 - 12342 mRNA_3974 0.68 0.2
1,038,928 + 12342 mRNA_3974 0.73 -1.0
1,039,098 - 12342 mRNA_3974 0.76 1.3
1,039,212 - 12342 mRNA_3974 0.77 -1.1
1,039,768 + 12342 mRNA_3974 0.85 0.5
1,040,272 + -0.1
1,040,567 + 0.2
1,040,873 - -1.0
1,041,349 - -0.8
1,041,442 + -1.3
1,041,525 - 1.4