Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3885

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822787 to 823648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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821,791 - -0.0
821,794 - -1.4
821,803 - -0.5
821,809 + -0.3
821,811 - -0.9
821,811 - -0.9
821,814 - 0.8
821,822 - 0.5
821,835 - 0.2
821,836 + -0.3
821,841 - 1.4
821,845 + -0.2
821,849 - 0.9
821,857 - 0.4
821,866 - -1.9
821,875 - -0.1
821,876 + -1.6
821,880 - 1.3
821,881 + 0.2
821,884 + 0.1
821,896 + -0.1
821,898 - -1.6
821,899 - 0.0
821,900 - -0.2
821,902 - 0.6
821,903 + -0.2
821,907 - -1.2
821,910 - -2.5
821,910 + -0.2
821,916 - -0.5
821,918 + 0.0
821,924 - 1.0
821,925 - 0.3
821,926 + 0.0
821,931 - -0.5
821,931 + -0.3
821,935 - -0.3
821,939 - 0.8
821,940 + -0.1
821,951 - -1.4
821,954 + 0.2
821,955 - -1.3
821,962 + 0.4
821,964 - -0.1
821,967 - 0.2
821,967 + -0.1
821,970 + -0.1
821,976 + 0.0
821,988 - 0.0
821,989 + -0.2
821,999 + -0.2
821,999 - 0.8
822,026 + -0.2
822,028 - -0.8
822,042 + 0.5
822,048 + -0.4
822,061 + 0.3
822,063 - -0.1
822,068 + 1.2
822,069 + -0.4
822,071 - -0.2
822,072 - -0.9
822,079 - -0.9
822,082 - -0.2
822,082 + 0.7
822,083 - -0.9
822,084 - 0.5
822,086 - -1.4
822,087 + -1.3
822,094 + 0.2
822,097 - -0.6
822,105 + -1.5
822,105 + 0.7
822,115 - -0.0
822,117 + -0.6
822,119 - -0.1
822,127 + -0.2
822,155 + -0.3
822,159 + -1.8
822,166 - 0.0
822,187 - -0.8
822,192 + 0.6
822,197 + 1.4
822,197 - -0.8
822,213 - -0.9
822,220 + -0.5
822,224 - 0.3
822,229 + -0.3
822,246 - -0.1
822,247 - -0.7
822,257 - -1.2
822,257 - 0.8
822,260 + 0.5
822,262 - -0.3
822,265 - 0.5
822,266 + -1.5
822,290 + 0.7
822,299 - -0.1
822,300 - -1.1
822,305 - 0.5
822,311 - 0.3
822,313 + -1.3
822,314 + 0.2
822,320 + -1.7
822,325 - 0.6
822,325 - 0.8
822,330 + -0.3
822,370 - -0.3
822,374 - 0.6
822,376 + 1.3
822,384 + -0.4
822,392 - -1.4
822,400 + 0.2
822,407 - -0.4
822,413 + -0.2
822,445 + 0.1
822,457 - 0.5
822,462 + -0.5
822,470 - 0.4
822,473 + -2.4
822,484 + -2.0
822,485 - 0.1
822,485 - -0.1
822,486 + 1.1
822,495 + -0.6
822,495 - -0.9
822,515 - -0.0
822,530 - 0.7
822,531 - 1.1
822,532 + 0.1
822,534 + -0.8
822,545 + 0.4
822,554 - -1.0
822,559 + -0.7
822,559 - -0.2
822,563 + 0.5
822,569 - 0.8
822,588 + 0.6
822,591 + -0.5
822,600 + -0.0
822,611 + 1.0
822,613 + 1.4
822,614 - -0.6
822,621 - -0.4
822,621 - 1.4
822,621 - -1.2
822,624 + -0.3
822,631 - -0.1
822,638 + -0.2
822,640 - -1.0
822,657 - -2.2
822,676 + -0.7
822,757 + 0.8
822,784 - -0.3
822,787 + -0.6
822,787 - -1.1
823,082 + 12253 mRNA_3885 0.34 -0.8
823,096 + 12253 mRNA_3885 0.36 0.7
823,237 + 12253 mRNA_3885 0.52 -0.5
823,241 + 12253 mRNA_3885 0.53 -0.3
823,309 + 12253 mRNA_3885 0.61 0.0
823,551 + 12253 mRNA_3885 0.89 0.8
823,699 - -0.4
824,026 - -0.2
824,306 - 12254 mRNA_3886 0.21 -1.0
824,402 + 12254 mRNA_3886 0.27 -0.1
824,405 - 12254 mRNA_3886 0.27 0.1
824,421 - 12254 mRNA_3886 0.28 0.0