Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3848

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3847: 12215 - Hypothetical Protein, at 732647 to 733359 12215 mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733873 to 734892 12216 mRNA_3849: 12217 - Hypothetical Protein, at 735253 to 736177 12217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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733,234 - 12215 mRNA_3847 0.82 0.7
733,346 + 0.1
733,381 + -0.6
733,491 + 0.7
733,513 + -0.9
733,792 + -1.2
733,792 + -0.9
733,798 + -0.5
733,803 + -1.0
733,803 - 0.1
733,811 + -2.5
733,813 - -0.3
733,816 - 0.4
733,824 - -1.2
733,933 - -0.2
733,946 - -0.6
733,958 - -1.2
733,968 - -0.4
733,971 + -1.9
733,972 - -1.1
734,102 - 12216 mRNA_3848 0.22 1.8
734,127 + 12216 mRNA_3848 0.25 0.4
734,129 + 12216 mRNA_3848 0.25 0.6
734,261 - 12216 mRNA_3848 0.38 -0.9
734,439 - 12216 mRNA_3848 0.55 1.8
734,683 + 12216 mRNA_3848 0.79 -0.1
734,797 + 0.1
734,841 + 0.2
734,982 - -1.8
735,148 + 0.1
735,170 - -1.1
735,180 + 0.9
735,237 - -1.2
735,274 + -0.9
735,304 - -2.0
735,310 + 0.7
735,312 + -0.5
735,314 + -0.7
735,317 - -0.4
735,327 - 1.3
735,370 - 12217 mRNA_3849 0.13 -1.4
735,396 - 12217 mRNA_3849 0.15 -1.0
735,438 - 12217 mRNA_3849 0.20 -0.8
735,446 + 12217 mRNA_3849 0.21 -0.3
735,456 + 12217 mRNA_3849 0.22 0.1
735,500 + 12217 mRNA_3849 0.27 -1.2
735,518 - 12217 mRNA_3849 0.29 0.2
735,521 + 12217 mRNA_3849 0.29 -0.6
735,568 + 12217 mRNA_3849 0.34 -1.0
735,590 - 12217 mRNA_3849 0.36 -0.4
735,605 + 12217 mRNA_3849 0.38 -1.1
735,612 + 12217 mRNA_3849 0.39 -0.7
735,626 + 12217 mRNA_3849 0.40 0.1
735,668 + 12217 mRNA_3849 0.45 -0.3
735,701 + 12217 mRNA_3849 0.48 -0.4
735,715 + 12217 mRNA_3849 0.50 -0.3
735,794 + 12217 mRNA_3849 0.58 -0.4
735,815 - 12217 mRNA_3849 0.61 -1.6
735,862 - 12217 mRNA_3849 0.66 0.0