Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3845

Experiments: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723329 to 725612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726085 to 727619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728608 to 730842 12214

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
725,810 - -0.7
725,826 - 0.5
725,831 - -0.2
725,966 - 1.5
725,990 - -1.5
726,093 + -0.3
726,278 + 12213 mRNA_3845 0.13 -1.1
726,552 - 12213 mRNA_3845 0.30 0.2
726,565 - 12213 mRNA_3845 0.31 -1.0
726,597 + 12213 mRNA_3845 0.33 -0.8
726,987 + 12213 mRNA_3845 0.59 -0.1
727,271 - 12213 mRNA_3845 0.77 0.2
727,403 + 12213 mRNA_3845 0.86 -1.4
727,558 + 0.5
727,698 + -0.3
727,699 - 0.9
727,711 + 0.4
727,712 - 0.0
727,827 + -0.2
727,842 + -0.3
727,992 - 0.9
728,001 + -0.2
728,007 + 1.2
728,022 - 1.7
728,030 + 1.1
728,260 + -0.2
728,278 - -1.5
728,279 - 0.2
728,282 + -0.5
728,287 - 0.2
728,299 - -0.1
728,308 + -0.1
728,314 + -1.4
728,432 - -1.4
728,436 - -1.0
728,437 + 0.5
728,466 + 0.1
728,590 - -0.6