Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3718

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3717: 12085 - K03979 obgE, cgtA GTPase, at 418976 to 421073 12085 mRNA_3718: 12086 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 421354 to 423944 12086 mRNA_3719: 12087 - K04043 dnaK molecular chaperone DnaK, at 424597 to 426828 12087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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421,136 - -1.6
421,137 + -1.4
421,279 - 1.0
421,284 + 0.7
421,289 - 0.4
421,297 - 1.4
421,312 + 1.2
421,312 + -0.5
421,452 - -0.4
421,460 - -0.1
421,481 - 1.7
421,482 - 0.5
421,487 + -1.1
421,752 + 12086 mRNA_3718 0.15 2.3
421,817 + 12086 mRNA_3718 0.18 -0.3
422,221 - 12086 mRNA_3718 0.33 -0.5
422,959 - 12086 mRNA_3718 0.62 0.2
422,965 + 12086 mRNA_3718 0.62 -2.1
422,966 - 12086 mRNA_3718 0.62 -1.8
422,976 + 12086 mRNA_3718 0.63 0.2
423,842 - -0.5
423,856 - -0.2
424,142 + -0.2
424,291 - -0.1