Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3709

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3708: 12076 - Hypothetical Protein, at 405406 to 406282 12076 mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406586 to 407790 12077 mRNA_3710: 12078 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408038 to 408694 12078 mRNA_3711: 12079 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408733 to 409937 12079

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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405,721 + 12076 mRNA_3708 0.36 1.3
405,768 + 12076 mRNA_3708 0.41 0.1
405,898 + 12076 mRNA_3708 0.56 0.1
405,907 - 12076 mRNA_3708 0.57 0.2
406,186 - 12076 mRNA_3708 0.89 -0.2
406,199 + 0.0
406,214 + -0.3
406,235 - 0.0
406,257 + -0.7
406,344 + -0.8
406,345 + 0.6
406,349 + -1.2
406,355 - -0.3
406,357 - -0.6
406,359 - 0.1
406,361 - -0.3
406,364 - -0.9
406,371 + -0.0
406,383 - -0.1
406,383 - 0.5
406,386 + -0.7
406,389 + -0.3
406,393 - -0.3
406,400 - 0.7
406,401 + -0.1
406,419 + -0.8
406,433 - 0.2
406,433 + -0.6
406,452 - 0.3
406,453 + -0.3
406,458 - 0.6
406,465 - -1.2
406,471 + 1.2
406,487 - -0.6
406,490 + -0.2
406,490 - 0.3
406,494 + -1.0
406,494 + 1.0
406,494 + 0.0
406,495 + 0.1
406,498 + -0.2
406,500 + -0.6
406,503 - -0.6
406,507 - 0.4
406,508 - -0.0
406,509 + -0.0
406,509 + 0.5
406,520 + -0.4
406,520 - -0.0
406,521 - -0.7
406,647 - -0.2
406,688 + 0.7
406,796 + 12077 mRNA_3709 0.17 -0.2
406,803 + 12077 mRNA_3709 0.18 -0.8
406,921 + 12077 mRNA_3709 0.28 -0.5
406,951 + 12077 mRNA_3709 0.30 -1.3
407,087 - 12077 mRNA_3709 0.42 -0.7
407,251 + 12077 mRNA_3709 0.55 -0.7
407,486 - 12077 mRNA_3709 0.75 -1.1
407,927 - 1.4
407,937 + -0.2
408,220 + 12078 mRNA_3710 0.28 0.1