Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3703

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390554 to 394764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394995 to 398800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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394,726 - -0.7
394,735 + 0.5
394,735 - -0.7
394,750 - -0.2
394,874 + -0.1
394,877 - 0.8
394,879 + 0.3
394,881 + -0.3
394,886 + 0.8
394,903 - -0.5
394,906 - -0.2
394,915 - -0.1
394,919 - 0.0
394,926 + -1.3
394,942 - -0.6
394,963 - 0.6
395,040 + -1.7
395,048 + -0.8
395,061 + 0.8
395,084 + -1.1
395,087 - 1.0
395,196 - 0.1
395,201 + -1.4
395,208 - -0.0
395,353 - -1.0
395,542 + 12071 mRNA_3703 0.14 0.0
395,660 - 12071 mRNA_3703 0.17 -0.1
395,665 - 12071 mRNA_3703 0.18 -1.1
396,364 + 12071 mRNA_3703 0.36 -1.6
396,387 - 12071 mRNA_3703 0.37 -0.2
396,505 - 12071 mRNA_3703 0.40 -0.4
396,541 - 12071 mRNA_3703 0.41 -0.5
396,606 - 12071 mRNA_3703 0.42 -1.7
396,698 + 12071 mRNA_3703 0.45 1.4
396,947 - 12071 mRNA_3703 0.51 -0.1
397,081 - 12071 mRNA_3703 0.55 0.4
397,113 + 12071 mRNA_3703 0.56 0.6
397,393 + 12071 mRNA_3703 0.63 0.3
397,517 - 12071 mRNA_3703 0.66 -0.3
397,542 + 12071 mRNA_3703 0.67 -0.4
397,803 + 12071 mRNA_3703 0.74 0.1
397,838 + 12071 mRNA_3703 0.75 -0.5
397,932 - 12071 mRNA_3703 0.77 -0.2
397,953 + 12071 mRNA_3703 0.78 -0.2
398,093 - 12071 mRNA_3703 0.81 0.1
398,384 + 12071 mRNA_3703 0.89 0.4
398,422 + 0.2
398,537 - 0.2
398,559 + -0.1
398,963 - -0.0
398,963 + -1.2
399,549 - -0.6
399,572 + -0.4
399,691 - -0.3
399,702 + 0.1
399,715 + -0.3