Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3625

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193379 to 194590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194842 to 197624 11993 mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198016 to 198652 11994

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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194,119 + 11992 mRNA_3624 0.61 0.2
194,560 - -0.5
194,562 + 0.1
194,752 + -1.3
194,755 - 0.2
195,196 + 11993 mRNA_3625 0.13 -0.2
195,482 + 11993 mRNA_3625 0.23 0.6
196,799 + 11993 mRNA_3625 0.70 1.0
197,225 - 11993 mRNA_3625 0.86 -0.0
197,364 - 0.0
197,393 - -1.5
197,498 - -0.8
197,522 - 0.1
197,536 + -0.9
197,542 + -0.3
197,545 - 3.3
197,633 + 0.7
197,644 - 0.5
197,681 - 0.4
197,686 + 1.6
197,688 - 0.2
197,696 - -0.4
197,696 - -1.0
197,706 + -0.6
197,713 - -1.1
197,713 - 1.2
197,750 - -0.2
197,755 - -1.0
197,878 - -0.1
197,882 + -0.2
197,885 + -0.3
197,888 + -0.2
197,889 + 0.9
197,891 + -1.6
197,898 - -1.1
197,898 - -0.6
198,011 - -0.7
198,019 - -0.7
198,033 - 0.9
198,196 - 11994 mRNA_3626 0.28 0.8
198,489 - 11994 mRNA_3626 0.74 0.2