Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3619

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179234 to 181455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181762 to 183020 11988

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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178,269 + -0.6
178,440 + 11986 mRNA_3618 0.27 -0.2
178,539 + 11986 mRNA_3618 0.41 -0.1
178,679 + 11986 mRNA_3618 0.61 0.8
178,731 + 11986 mRNA_3618 0.69 -0.4
178,850 - 11986 mRNA_3618 0.86 -2.1
178,851 - 11986 mRNA_3618 0.86 -0.7
178,856 + 11986 mRNA_3618 0.87 -1.5
179,128 - 0.0
179,134 + -0.3
179,163 - -0.8
179,193 - 1.3
179,197 + 1.1
179,201 + 1.0
179,324 - -0.1
179,662 - 11987 mRNA_3619 0.19 0.4
180,225 + 11987 mRNA_3619 0.45 0.7
180,225 + 11987 mRNA_3619 0.45 -0.9
180,643 - 11987 mRNA_3619 0.63 0.3
180,795 - 11987 mRNA_3619 0.70 -0.3
180,881 - 11987 mRNA_3619 0.74 0.9
180,929 + 11987 mRNA_3619 0.76 -0.5
180,989 + 11987 mRNA_3619 0.79 0.7
181,365 - 0.5
181,579 + -0.4
181,613 - -0.5
181,615 - 0.0
181,621 - -0.7
181,627 + 0.5
181,656 - 0.4
181,685 - -0.2
181,687 - 0.0
181,695 + -0.3
181,698 - -0.4
181,701 - -0.3
181,711 + -1.2
181,853 - -0.2
182,001 + 11988 mRNA_3620 0.19 -0.4
182,026 + 11988 mRNA_3620 0.21 -0.1
182,114 + 11988 mRNA_3620 0.28 -0.1
182,441 - 11988 mRNA_3620 0.54 0.1