Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3600

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138513 to 139861 11967 mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140474 to 142309 11968 mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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140,086 + -0.1
140,121 - 0.8
140,123 + 0.9
140,144 + 0.1
140,254 - -0.9
140,255 + 0.4
140,259 + -0.6
140,262 + -0.1
140,263 - -0.2
140,265 + 0.1
140,265 - -0.5
140,266 + -0.7
140,274 + 0.3
140,276 + 0.5
140,709 - 11968 mRNA_3600 0.13 -0.2
140,878 - 11968 mRNA_3600 0.22 -1.2
141,154 + 11968 mRNA_3600 0.37 0.9
141,172 + 11968 mRNA_3600 0.38 -1.1
141,451 - 11968 mRNA_3600 0.53 0.4
142,196 - -1.1
142,209 + -0.5
142,602 - -0.2
142,772 - 0.3
142,793 + 0.1
142,861 - 1.0
142,915 + 0.8
142,916 - -1.0
142,923 + -0.4
142,932 - -0.7
142,955 - -0.8
142,958 - -0.1
143,046 - -0.4
143,076 + -1.5
143,098 - -1.3
143,255 - -1.0