Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3589

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113212 to 115744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116230 to 117801 11957

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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115,790 - 0.4
116,215 + 1.3
116,230 - 0.6
116,234 + -1.1
116,372 + -0.4
117,133 + 11957 mRNA_3589 0.57 0.9
117,270 + 11957 mRNA_3589 0.66 -1.8
117,308 - 11957 mRNA_3589 0.69 0.0
117,377 - 11957 mRNA_3589 0.73 -0.7
117,448 - 11957 mRNA_3589 0.77 0.1
117,686 - -1.0
117,689 + -0.9
117,693 - 0.3
117,838 + 1.0
117,855 + 0.1
118,129 - 0.4
118,140 + -0.4
118,261 + -0.2
118,287 + -0.2
118,420 + 0.8
118,570 + -0.7
118,732 - -0.8
118,736 + 1.1
118,743 + 1.2
118,745 - 1.3
118,746 - 1.5
118,746 + 1.0
118,747 - 1.8
118,749 + 1.5
118,753 - -0.9
118,753 + -0.4