Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3570

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3569: 11937 - BLAST rna recognition domain-containing protein [Colletotri..., at 72269 to 75186 11937 mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75276 to 76903 11938 mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77591 to 78625 11939

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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74,631 - 11937 mRNA_3569 0.81 -0.6
74,771 - 11937 mRNA_3569 0.86 -0.1
74,786 - 11937 mRNA_3569 0.86 -0.2
74,794 + 11937 mRNA_3569 0.87 0.4
74,802 - 11937 mRNA_3569 0.87 0.3
74,812 - 11937 mRNA_3569 0.87 -0.3
74,840 - 11937 mRNA_3569 0.88 -2.8
74,932 - 0.6
74,934 - -0.7
74,936 - 0.2
74,939 - -0.3
74,963 + 1.3
74,965 + 0.4
75,062 + -0.1
75,087 - 0.1
75,087 - 0.3
75,105 + -0.7
75,119 + 0.4
75,119 + -1.2
75,122 - -1.2
75,123 - -0.4
75,271 + -0.4
75,548 - 11938 mRNA_3570 0.17 -1.4
75,558 + 11938 mRNA_3570 0.17 1.0
75,807 + 11938 mRNA_3570 0.33 -0.2
75,994 + 11938 mRNA_3570 0.44 -0.9
76,099 - 11938 mRNA_3570 0.51 -0.1
76,125 + 11938 mRNA_3570 0.52 0.5
76,288 + 11938 mRNA_3570 0.62 0.2
76,380 - 11938 mRNA_3570 0.68 0.3
76,413 + 11938 mRNA_3570 0.70 1.3
76,585 - 11938 mRNA_3570 0.80 0.3
76,851 + -1.4
76,863 + -0.0
77,105 + -0.0
77,260 - 1.1
77,608 - -0.1