Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3558

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925 mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44062 to 47314 11926 mRNA_3559: 11927 - K18622 ADD adducin, at 47596 to 49033 11927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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43,320 - 11925 mRNA_3557 0.76 0.1
43,869 - 0.4
43,894 - 0.7
43,895 + 0.3
44,664 - 11926 mRNA_3558 0.19 -1.0
47,522 - 0.2
47,525 + -0.1
47,529 - -1.2
47,530 - -0.9
47,532 + -0.5
47,533 - -0.3
47,536 - -1.0
47,536 - 0.0
47,537 + -0.7
47,537 + 0.5
47,538 - 1.6
47,538 + -0.5
47,539 + -0.2
47,547 - -0.6
47,553 + -0.1
47,563 - -1.3
47,709 + 0.4
47,713 - 0.5
47,906 + 11927 mRNA_3559 0.22 -2.6
48,016 - 11927 mRNA_3559 0.29 0.5
48,283 + 11927 mRNA_3559 0.48 -1.0