Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3527

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311726 to 314497 11894 mRNA_3527: 11895 - K08658 RCE1, FACE2 prenyl protein peptidase, at 315026 to 316520 11895 mRNA_3528: 11896 - Hypothetical Protein, at 316787 to 317613 11896

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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314,270 - -0.7
314,428 - -0.0
314,429 + -1.2
314,446 - -1.1
314,555 - 0.0
314,564 + 1.5
314,567 - 0.5
314,583 - -0.1
314,590 - 1.0
314,591 + -0.2
314,607 + 0.5
314,684 - -0.6
314,719 - -0.4
314,723 - -0.8
314,724 - 1.9
314,726 - -0.6
314,740 + 0.2
314,745 - -1.1
314,756 + 0.9
314,860 + -0.0
314,863 - 0.1
314,868 - 0.7
314,871 - -1.2
314,877 + -1.0
314,883 + 0.5
314,887 - -0.3
314,894 + 0.5
314,896 + -0.0
314,898 + -0.3
314,920 - -1.5
314,964 - 0.1
314,967 - 1.9
314,967 + -0.2
314,971 - -1.0
314,972 + 0.5
314,995 + -0.2
315,101 - -0.8
315,119 - -0.3
315,121 - -0.7
315,125 - 0.2
315,161 + -0.1
315,294 - 11895 mRNA_3527 0.18 -0.6
315,443 + 11895 mRNA_3527 0.28 -0.6
315,748 - 11895 mRNA_3527 0.48 -0.5
315,826 + 11895 mRNA_3527 0.54 -0.8
316,395 + -0.0
316,409 - 0.4
316,653 + -1.0
316,683 + -0.0
316,690 + -2.0
316,694 + -1.0
316,706 + -0.2
316,803 + -0.7
316,817 - -0.9
316,841 + -0.4
316,876 + 11896 mRNA_3528 0.11 0.4
316,896 + 11896 mRNA_3528 0.13 -0.0
316,916 - 11896 mRNA_3528 0.16 1.2
316,996 + 11896 mRNA_3528 0.25 0.6
317,420 - 11896 mRNA_3528 0.77 -0.4