Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3519

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3518: 11886 - K12275 SEC62 translocation protein SEC62, at 295819 to 296849 11886 mRNA_3519: 11887 - KOG4686 Predicted sugar transporter, at 297438 to 299524 11887 mRNA_3520: 11888 - BLAST mannose-6-phosphate isomerase, class I [Kwoniella..., at 299800 to 300733 11888

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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296,896 + -0.2
296,898 - -0.4
296,903 + -0.8
296,912 + -0.1
297,076 - 0.7
297,103 - 0.1
297,104 + 1.5
297,138 + -0.1
297,156 - -0.2
297,167 - -1.8
297,181 + 0.5
297,193 - -0.5
297,211 + -1.5
297,211 + 0.0
297,214 - -1.5
297,230 - -1.0
297,281 - -0.7
297,288 - 0.3
297,305 + -0.5
297,312 + -2.4
297,356 - -0.1
297,417 - -1.0
297,477 + 1.1
297,510 - 0.1
297,811 + 11887 mRNA_3519 0.18 0.2
298,086 + 11887 mRNA_3519 0.31 0.2
298,087 - 11887 mRNA_3519 0.31 -0.3
299,309 - 11887 mRNA_3519 0.90 -0.2
299,415 - -0.4