Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3461

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3460: 11828 - HMMPfam-Fasciclin domain-PF02469,SUPERFAMILY--SSF82153, at 151624 to 153827 11828 mRNA_3461: 11829 - KOG1217 Fibrillins and related proteins containing Ca2+-binding EGF-like domains, at 154218 to 156143 11829 mRNA_3462: 11830 - K17978 NUM1 nuclear migration protein NUM1, at 156661 to 162747 11830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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153,331 - 11828 mRNA_3460 0.77 -0.3
153,332 + 11828 mRNA_3460 0.77 0.9
153,334 + 11828 mRNA_3460 0.78 -0.1
153,344 - 11828 mRNA_3460 0.78 0.5
153,345 - 11828 mRNA_3460 0.78 0.2
153,477 + 11828 mRNA_3460 0.84 1.4
153,517 + 11828 mRNA_3460 0.86 -1.5
153,525 + 11828 mRNA_3460 0.86 1.3
153,646 + -0.6
153,753 - -1.2
153,775 - 0.4
153,793 - 0.0
153,801 - 0.2
153,808 - 1.1
153,909 - 0.6
153,916 + -0.1
153,939 - 1.1
154,078 + 0.2
154,215 + 1.0
154,351 - -1.5
154,369 - -0.4
154,376 + 0.7
154,963 + 11829 mRNA_3461 0.39 0.1
155,158 - 11829 mRNA_3461 0.49 0.1
155,303 - 11829 mRNA_3461 0.56 -0.0
155,431 - 11829 mRNA_3461 0.63 -0.7
155,765 + 11829 mRNA_3461 0.80 0.8
155,847 - 11829 mRNA_3461 0.85 -0.9
156,002 + -0.2
156,017 + 0.1
156,019 - -0.1
156,054 + 0.7
156,226 - -0.5
156,308 + -0.1
156,316 - 0.3
156,317 + 0.8
156,320 + -0.0
156,476 + 1.4