Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3441

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3440: 11808 - SUPERFAMILY--SSF56112, at 110002 to 112287 11808 mRNA_3441: 11809 - K00729 ALG5 dolichyl-phosphate beta-glucosyltransferase, at 112497 to 113807 11809 mRNA_3442: 11810 - SUPERFAMILY--SSF52047, at 113931 to 115281 11810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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111,549 + 11808 mRNA_3440 0.68 0.6
111,565 + 11808 mRNA_3440 0.68 -0.2
111,650 + 11808 mRNA_3440 0.72 -1.6
111,726 + 11808 mRNA_3440 0.75 0.5
111,956 - 11808 mRNA_3440 0.85 -1.0
111,964 + 11808 mRNA_3440 0.86 -1.0
112,142 + -0.5
112,145 + 0.8
112,151 - 0.9
112,268 - -1.4
112,278 - 0.7
112,406 - -0.1
112,409 + -0.7
112,416 - 1.4
112,429 + 0.5
112,546 - -0.2
112,548 - 0.2
112,559 - 0.4
112,567 - -0.4
112,823 - 11809 mRNA_3441 0.25 -0.4
112,839 + 11809 mRNA_3441 0.26 0.7
112,856 + 11809 mRNA_3441 0.27 -0.2
112,878 + 11809 mRNA_3441 0.29 -0.2
112,884 + 11809 mRNA_3441 0.30 -1.3
113,125 - 11809 mRNA_3441 0.48 0.2
113,129 + 11809 mRNA_3441 0.48 1.3
113,133 - 11809 mRNA_3441 0.49 -0.8
113,178 - 11809 mRNA_3441 0.52 1.1
113,477 - 11809 mRNA_3441 0.75 0.4
113,575 - 11809 mRNA_3441 0.82 -0.4
113,685 + -1.0
113,758 + -0.8
113,909 - -0.1
114,035 + -0.1
114,175 + 11810 mRNA_3442 0.18 0.2
114,180 - 11810 mRNA_3442 0.18 -0.0
114,182 - 11810 mRNA_3442 0.19 0.0
114,340 - 11810 mRNA_3442 0.30 1.2
114,568 + 11810 mRNA_3442 0.47 0.3