Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3364

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499965 to 500841 11731 mRNA_3364: 11732 - K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit, at 500916 to 502448 11732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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499,954 - -0.9
500,007 - -0.7
500,014 - -0.1
500,909 + 1.0
501,031 + -0.8
501,033 - 0.2
501,038 + -1.5
501,052 - -1.1
501,478 + 11732 mRNA_3364 0.37 -1.2
501,594 - 11732 mRNA_3364 0.44 -0.9
501,765 - 11732 mRNA_3364 0.55 0.7
502,050 - 11732 mRNA_3364 0.74 -0.1
502,172 - 11732 mRNA_3364 0.82 -0.2
502,327 - -0.4
502,811 + 0.7
502,816 + -1.5
502,863 + 0.4
502,920 - -0.3
502,926 + 0.6
503,055 + 0.2
503,345 - -0.1
503,353 + -1.2
503,356 - 0.6
503,363 + 0.7
503,363 + -0.3
503,368 + 0.6
503,368 - -0.1
503,377 - 1.1
503,378 - -1.0
503,418 - -0.0