Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3316

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375335 to 379207 11683 mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379574 to 381154 11684 mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381412 to 382785 11685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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378,924 - -0.5
379,125 - -0.8
379,190 + 0.9
379,207 + 0.3
379,230 - 0.2
379,334 - -0.2
379,361 - -0.6
379,366 - 1.5
379,371 - 0.1
379,375 + 0.4
379,487 - -1.2
379,511 - 0.4
379,512 + -0.0
379,524 + 0.1
379,529 - -0.1
379,536 - 0.4
379,712 + -0.4
379,827 + 11684 mRNA_3316 0.16 -1.0
379,828 - 11684 mRNA_3316 0.16 0.7
379,846 - 11684 mRNA_3316 0.17 2.0
379,936 + 11684 mRNA_3316 0.23 -0.1
380,118 - 11684 mRNA_3316 0.34 0.4
380,229 - 11684 mRNA_3316 0.41 -1.4
380,229 - 11684 mRNA_3316 0.41 -0.4
380,229 - 11684 mRNA_3316 0.41 -0.7
380,280 + 11684 mRNA_3316 0.45 -1.2
380,581 + 11684 mRNA_3316 0.64 -0.2
380,669 - 11684 mRNA_3316 0.69 -0.8
380,839 + 11684 mRNA_3316 0.80 -0.1
380,840 - 11684 mRNA_3316 0.80 1.6
380,871 - 11684 mRNA_3316 0.82 0.2
381,127 - 0.1
381,403 + 0.1
381,760 + 11685 mRNA_3317 0.25 -0.6
381,860 + 11685 mRNA_3317 0.33 -0.0
381,872 + 11685 mRNA_3317 0.33 -1.4
382,024 - 11685 mRNA_3317 0.45 -0.7
382,024 + 11685 mRNA_3317 0.45 0.2