Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3290

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3290: 11658 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 304969 to 308540 11658 mRNA_3291: 11659 - BLAST expressed protein [Schizophyllum commune H4-8], at 308905 to 310428 11659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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304,634 - -0.5
304,658 + 1.3
304,768 + -0.0
304,792 + -0.5
304,809 - -1.7
304,814 + -2.0
304,820 + 0.0
304,820 + -0.7
304,937 - 0.5
304,941 + -0.1
304,946 + 0.1
304,957 + -0.4
305,365 - 11658 mRNA_3290 0.11 0.3
305,960 + 11658 mRNA_3290 0.28 -0.7
305,969 - 11658 mRNA_3290 0.28 0.2
306,109 - 11658 mRNA_3290 0.32 -0.8
306,249 - 11658 mRNA_3290 0.36 -1.1
306,252 - 11658 mRNA_3290 0.36 0.2
306,562 - 11658 mRNA_3290 0.45 -0.2
306,982 - 11658 mRNA_3290 0.56 0.8
306,985 - 11658 mRNA_3290 0.56 -0.5
306,987 - 11658 mRNA_3290 0.56 -0.4
307,014 + 11658 mRNA_3290 0.57 1.7
307,269 - 11658 mRNA_3290 0.64 -0.1
307,279 + 11658 mRNA_3290 0.65 -0.3
307,313 + 11658 mRNA_3290 0.66 0.3
307,446 + 11658 mRNA_3290 0.69 1.4
307,600 + 11658 mRNA_3290 0.74 -0.5
307,720 - 11658 mRNA_3290 0.77 1.2
307,723 + 11658 mRNA_3290 0.77 -0.6
307,887 + 11658 mRNA_3290 0.82 2.1
308,350 - 0.0
308,466 + -0.2
308,761 + -0.3
308,762 - -1.9
309,046 - -0.4
309,214 + 11659 mRNA_3291 0.20 -0.8
309,254 - 11659 mRNA_3291 0.23 1.7
309,540 + 11659 mRNA_3291 0.42 -1.0