Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3231

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598 mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157802 to 159637 11599 mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159953 to 161045 11600

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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157,016 + 11598 mRNA_3230 0.67 0.2
157,148 - 11598 mRNA_3230 0.73 -0.6
157,158 - 11598 mRNA_3230 0.74 -0.5
157,302 - 11598 mRNA_3230 0.80 1.0
157,320 + 11598 mRNA_3230 0.81 0.0
157,324 - 11598 mRNA_3230 0.81 -1.0
157,453 - 11598 mRNA_3230 0.87 0.4
157,461 - 11598 mRNA_3230 0.87 -0.5
157,468 + 11598 mRNA_3230 0.87 -0.2
157,617 - 0.1
157,627 + 0.6
157,629 - 1.5
157,665 - -0.8
157,672 + -0.9
157,676 + 0.1
157,679 + 0.0
157,710 - -2.4
157,923 - -1.0
158,269 + 11599 mRNA_3231 0.25 -0.2
158,379 + 11599 mRNA_3231 0.31 0.9
158,724 + 11599 mRNA_3231 0.50 -0.3
158,799 + 11599 mRNA_3231 0.54 -0.6
158,837 - 11599 mRNA_3231 0.56 1.1
158,847 + 11599 mRNA_3231 0.57 0.2
159,272 + 11599 mRNA_3231 0.80 0.4
159,410 - 11599 mRNA_3231 0.88 -0.1
159,517 - -0.3
159,523 - -0.2
159,685 + 0.5
159,730 - -0.2
159,843 + 0.0
159,847 - 1.2
159,855 + -0.3
159,860 - -0.9
159,951 + -2.3
159,987 - -1.0
159,999 - 0.2
160,004 - -0.3
160,152 - 11600 mRNA_3232 0.18 2.0
160,305 + 11600 mRNA_3232 0.32 -0.4