Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3158

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450126 to 451000 11525 mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451339 to 452325 11526 mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452393 to 454134 11527

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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450,483 + 11525 mRNA_3157 0.41 -1.2
450,606 - 11525 mRNA_3157 0.55 -0.4
450,608 - 11525 mRNA_3157 0.55 -0.8
450,614 + 11525 mRNA_3157 0.56 -1.5
450,633 + 11525 mRNA_3157 0.58 -0.7
450,768 + 11525 mRNA_3157 0.73 -0.9
450,770 + 11525 mRNA_3157 0.74 0.5
450,912 + 11525 mRNA_3157 0.90 0.2
450,986 + -0.8
451,051 - 0.1
451,058 + 0.7
451,060 - -0.8
451,063 + -0.1
451,063 + -0.3
451,064 + -0.9
451,066 + -0.2
451,069 - 0.8
451,075 + -0.1
451,082 + -0.6
451,089 - 0.1
451,091 + -1.4
451,092 + 0.1
451,092 + -0.5
451,232 + -1.3
451,234 + -0.2
451,246 - -0.3
451,382 + -0.1
451,401 + 1.4
451,523 + 11526 mRNA_3158 0.19 -0.3
451,674 + 11526 mRNA_3158 0.34 0.2
451,679 + 11526 mRNA_3158 0.34 -0.1
451,710 + 11526 mRNA_3158 0.38 -0.1
451,820 + 11526 mRNA_3158 0.49 -0.3
451,825 + 11526 mRNA_3158 0.49 0.6
451,839 + 11526 mRNA_3158 0.51 -0.7
451,849 + 11526 mRNA_3158 0.52 -0.2
451,953 - 11526 mRNA_3158 0.62 -1.0
451,962 + 11526 mRNA_3158 0.63 -1.1
451,963 - 11526 mRNA_3158 0.63 -0.5
451,972 - 11526 mRNA_3158 0.64 -1.1
451,973 + 11526 mRNA_3158 0.64 -0.5
451,977 - 11526 mRNA_3158 0.65 -0.3
452,121 + 11526 mRNA_3158 0.79 0.6
452,139 + 11526 mRNA_3158 0.81 0.1
452,158 + 11526 mRNA_3158 0.83 0.1
452,257 + -2.6
452,259 + 1.4
452,262 + -0.2
452,271 - -1.1
452,274 - 0.2
452,274 - 2.0
452,279 - -0.4
452,279 + -0.7
452,284 + 0.8
452,284 + 0.6
452,284 + -1.0
452,285 - 0.1
452,401 - -0.5
452,425 - -0.6
452,426 - 2.0
452,427 + -0.7
452,430 + 0.3
452,464 - -1.1
452,562 - -0.1
452,564 + -1.4
452,576 + 11527 mRNA_3159 0.11 0.5
452,870 + 11527 mRNA_3159 0.27 -1.2
452,872 + 11527 mRNA_3159 0.27 0.4
453,000 - 11527 mRNA_3159 0.35 -1.5
453,010 - 11527 mRNA_3159 0.35 -0.2
453,059 - 11527 mRNA_3159 0.38 -1.1
453,140 - 11527 mRNA_3159 0.43 -0.0
453,281 + 11527 mRNA_3159 0.51 0.1