Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3102

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3101: 11469 - K01490 AMPD AMP deaminase, at 321739 to 325524 11469 mRNA_3102: 11470 - BLAST mannoprotein [Rhizoctonia solani AG-1 IA], at 325747 to 328243 11470 mRNA_3103: 11471 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 328830 to 331254 11471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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324,799 - 11469 mRNA_3101 0.81 -0.2
324,964 - 11469 mRNA_3101 0.85 -0.5
324,971 + 11469 mRNA_3101 0.85 -0.4
325,072 + 11469 mRNA_3101 0.88 0.8
325,117 + 11469 mRNA_3101 0.89 -0.6
325,139 + 11469 mRNA_3101 0.90 -0.2
325,143 + 11469 mRNA_3101 0.90 -0.0
325,252 - -0.1
325,291 + -0.9
325,413 - -0.3
325,413 - -0.3
325,421 - -0.4
325,435 + -0.6
325,445 - -0.6
325,534 - -0.2
325,557 + -0.1
325,558 - -0.5
325,559 - 0.1
325,561 - -0.1
325,562 - 0.1
325,568 - 0.4
325,568 - -1.6
325,572 + -0.6
325,575 - -0.1
325,577 - 0.2
325,579 - -0.1
325,581 - 1.0
325,595 - -0.9
325,595 - 0.0
325,595 - 0.6
325,596 + 0.0
325,601 + -0.6
325,603 - 0.3
325,722 + -0.4
325,735 - -0.5
325,750 - 0.5
325,762 - 1.2
325,763 - 1.5
325,763 - 0.1
325,763 - -0.3
325,763 - -0.3
325,763 - -0.1
325,763 - -0.8
325,764 - 0.4
325,768 + -1.0
325,768 - 0.6
325,769 - 0.1
325,770 + -0.2
325,771 + 0.9
325,772 + 0.7
325,772 - 0.5
325,775 + 0.4
325,777 + -2.0
325,786 - -0.3
325,795 + -0.3
325,804 - 0.9
325,823 + -1.0
325,871 + -1.5
325,874 - -1.7
325,891 + -0.2
325,894 - 0.2
325,902 + -0.8
325,903 - -0.8
325,904 + 0.2
325,906 - -0.2
325,909 + -1.1
325,918 - -0.7
325,918 - -0.2
325,921 - -1.4
325,922 + 0.3
325,922 + 0.1
325,923 - -0.2
325,924 + -0.4
325,928 + -0.4
325,929 + 0.3
325,930 - -0.7
325,932 - 0.3
325,935 - -0.3
325,936 + -0.5
325,944 + -0.7
325,946 - -0.1
325,950 + 0.2
325,952 + -0.0
325,953 - -2.1
325,957 - -0.7
326,077 - 11470 mRNA_3102 0.13 -0.2
326,078 - 11470 mRNA_3102 0.13 -1.0
326,084 + 11470 mRNA_3102 0.13 -0.7
326,089 - 11470 mRNA_3102 0.14 0.5
326,090 - 11470 mRNA_3102 0.14 -0.1
326,091 - 11470 mRNA_3102 0.14 -0.1
326,095 - 11470 mRNA_3102 0.14 -0.3
326,096 - 11470 mRNA_3102 0.14 0.0
326,101 + 11470 mRNA_3102 0.14 0.1
326,101 + 11470 mRNA_3102 0.14 0.2
326,117 + 11470 mRNA_3102 0.15 0.3
326,122 + 11470 mRNA_3102 0.15 0.2
326,221 + 11470 mRNA_3102 0.19 0.1
326,223 - 11470 mRNA_3102 0.19 -1.9
326,226 - 11470 mRNA_3102 0.19 -0.1
326,235 - 11470 mRNA_3102 0.20 -0.1
326,249 + 11470 mRNA_3102 0.20 1.1
326,251 - 11470 mRNA_3102 0.20 -0.3
326,263 + 11470 mRNA_3102 0.21 -0.2
326,270 + 11470 mRNA_3102 0.21 0.5
326,294 + 11470 mRNA_3102 0.22 0.0
326,306 + 11470 mRNA_3102 0.22 -0.3
326,405 + 11470 mRNA_3102 0.26 -0.3
326,417 - 11470 mRNA_3102 0.27 -0.5
326,498 + 11470 mRNA_3102 0.30 -0.8
326,513 + 11470 mRNA_3102 0.31 0.2
326,554 - 11470 mRNA_3102 0.32 -0.2
326,562 + 11470 mRNA_3102 0.33 -0.3
326,585 + 11470 mRNA_3102 0.34 -0.4
326,810 - 11470 mRNA_3102 0.43 -0.3
326,832 + 11470 mRNA_3102 0.43 -0.4
326,835 + 11470 mRNA_3102 0.44 0.2
326,851 + 11470 mRNA_3102 0.44 -1.8
326,855 - 11470 mRNA_3102 0.44 -0.4
326,903 - 11470 mRNA_3102 0.46 0.2
326,988 - 11470 mRNA_3102 0.50 -1.2
326,994 + 11470 mRNA_3102 0.50 0.8
327,138 - 11470 mRNA_3102 0.56 -1.5
327,164 + 11470 mRNA_3102 0.57 -0.7
327,165 - 11470 mRNA_3102 0.57 -1.0
327,273 - 11470 mRNA_3102 0.61 -0.5
327,434 - 11470 mRNA_3102 0.68 -0.1
327,602 + 11470 mRNA_3102 0.74 0.7
327,713 - 11470 mRNA_3102 0.79 -1.0
327,728 - 11470 mRNA_3102 0.79 -0.5
327,759 - 11470 mRNA_3102 0.81 0.2
327,831 + 11470 mRNA_3102 0.83 -0.4
327,869 - 11470 mRNA_3102 0.85 1.9
327,876 - 11470 mRNA_3102 0.85 -0.2
328,304 - 0.2
328,318 - -1.6
328,320 - -1.1
328,341 + 0.7
328,457 + -0.8
328,496 + -1.2
328,548 - 0.4
328,864 + -0.6
328,932 + 0.7
328,998 - 0.4
329,099 - 11471 mRNA_3103 0.11 1.4
329,100 + 11471 mRNA_3103 0.11 0.2
329,100 + 11471 mRNA_3103 0.11 -1.9