Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3060

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3059: 11427 - Hypothetical Protein, at 217589 to 219191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219691 to 221317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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218,747 + 11427 mRNA_3059 0.72 0.3
218,798 - 11427 mRNA_3059 0.75 -0.5
218,892 - 11427 mRNA_3059 0.81 -1.9
218,996 + 11427 mRNA_3059 0.88 -2.1
219,037 + 0.2
219,182 - -0.6
219,183 - 0.4
219,309 - -0.1
219,330 - 0.1
219,331 - -0.3
219,346 - 0.6
219,346 - -1.2
219,347 + 1.2
219,451 - -0.8
219,453 + 0.1
219,467 - 1.2
219,484 - -0.7
219,501 - 0.6
219,513 + -2.9
219,624 - -0.2
219,630 + -0.7
219,630 + 0.3
219,637 + 0.2
219,639 + -0.1
219,753 - 0.1
219,759 - -1.0
219,763 + -0.8
219,765 - -0.3
219,768 - 0.1
219,773 + -0.8
219,780 - 0.3
219,902 - 11428 mRNA_3060 0.13 -0.3
219,902 - 11428 mRNA_3060 0.13 0.6
219,903 + 11428 mRNA_3060 0.13 -0.3
219,908 + 11428 mRNA_3060 0.13 -0.8
219,931 + 11428 mRNA_3060 0.15 -0.3
220,038 - 11428 mRNA_3060 0.21 0.2
220,082 + 11428 mRNA_3060 0.24 0.0
220,477 - 11428 mRNA_3060 0.48 -1.3
220,584 - 11428 mRNA_3060 0.55 0.7
220,591 + 11428 mRNA_3060 0.55 0.4
220,592 + 11428 mRNA_3060 0.55 0.1
220,599 - 11428 mRNA_3060 0.56 -0.9
221,253 + -2.3
221,380 - 0.6
221,387 + -0.0
221,397 + -1.2
221,489 - 0.1
221,818 + 0.0
221,962 + 0.5
222,113 + 11429 mRNA_3061 0.10 -0.6
222,222 - 11429 mRNA_3061 0.14 0.1
222,241 - 11429 mRNA_3061 0.14 1.3
222,268 - 11429 mRNA_3061 0.15 1.1