Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2995

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30118 to 34295 11362 mRNA_2995: 11363 - K20290 COG3, SEC34 conserved oligomeric Golgi complex subunit 3, at 34550 to 37704 11363 mRNA_2996: 11364 - Hypothetical Protein, at 37820 to 39043 11364

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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33,554 + 11362 mRNA_2994 0.82 -1.4
33,814 + 11362 mRNA_2994 0.88 -1.4
33,902 - 0.1
34,049 - -0.3
34,167 - -0.3
34,189 + 0.3
34,208 + 1.6
34,212 - -0.6
34,217 + 0.1
34,220 + 1.0
34,352 + 0.8
34,355 - -0.4
34,358 + -0.4
34,364 - -2.8
34,371 - -1.2
34,377 + -2.1
34,384 + -2.4
34,387 - 0.2
34,402 + 0.2
34,408 - -0.8
34,421 + -0.1
34,431 + -0.3
34,648 + -0.1
34,697 + -0.2
34,697 + -1.5
35,117 - 11363 mRNA_2995 0.18 -0.4
35,245 - 11363 mRNA_2995 0.22 0.4
35,247 - 11363 mRNA_2995 0.22 -0.8
35,579 - 11363 mRNA_2995 0.33 -0.7
35,693 - 11363 mRNA_2995 0.36 0.2
35,751 - 11363 mRNA_2995 0.38 -0.8
36,003 + 11363 mRNA_2995 0.46 1.4
36,165 + 11363 mRNA_2995 0.51 -2.4
36,261 + 11363 mRNA_2995 0.54 0.6
36,278 - 11363 mRNA_2995 0.55 -1.0
36,410 - 11363 mRNA_2995 0.59 -1.8
36,440 - 11363 mRNA_2995 0.60 -0.3
36,612 - 11363 mRNA_2995 0.65 -1.9
36,682 + 11363 mRNA_2995 0.68 0.4
36,683 - 11363 mRNA_2995 0.68 -0.7
36,808 + 11363 mRNA_2995 0.72 -0.3
36,821 + 11363 mRNA_2995 0.72 -1.8
36,821 + 11363 mRNA_2995 0.72 0.1
36,825 - 11363 mRNA_2995 0.72 0.1
36,856 - 11363 mRNA_2995 0.73 -0.2
37,048 - 11363 mRNA_2995 0.79 0.1
37,381 + 11363 mRNA_2995 0.90 -0.5
37,649 + -0.5
37,733 - 0.5
37,778 - -0.7