Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2832

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318054 to 319183 11199 mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319587 to 320810 11200 mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321440 to 324159 11201

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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318,672 + 11199 mRNA_2831 0.55 -0.0
318,879 - 11199 mRNA_2831 0.73 -0.6
319,034 - 11199 mRNA_2831 0.87 0.9
319,255 - 0.0
319,302 + -0.1
319,520 - -0.1
319,660 - -0.1
319,846 - 11200 mRNA_2832 0.21 -1.1
320,178 - 11200 mRNA_2832 0.48 0.2
320,297 + 11200 mRNA_2832 0.58 0.0
320,329 - 11200 mRNA_2832 0.61 0.1
320,338 - 11200 mRNA_2832 0.61 0.5
320,705 - 0.6
320,714 + 0.4
320,719 - -0.9
320,723 - -1.1
320,781 + -0.2
320,785 - -0.1
320,815 + -2.8
320,857 + -0.1
320,863 + -2.4
320,870 - 1.1
320,974 - 1.7
321,094 + -1.1
321,573 - -0.9
321,592 + -0.8
321,749 + 11201 mRNA_2833 0.11 0.9