Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2809

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269906 to 271117 11176 mRNA_2809: 11177 - K08596 SENP7 sentrin-specific protease 7, at 271552 to 278521 11177 mRNA_2810: 11178 - K00026 MDH2 malate dehydrogenase, at 278707 to 280370 11178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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270,594 + 11176 mRNA_2808 0.57 1.8
270,639 - 11176 mRNA_2808 0.60 0.8
271,064 + -0.6
271,078 + 0.6
271,204 - 1.1
271,223 + 0.2
271,356 + -0.0
271,363 - 0.7
271,512 + -0.6
271,552 - -0.2
271,786 - 1.8
272,341 + 11177 mRNA_2809 0.11 0.0
272,537 + 11177 mRNA_2809 0.14 -0.5
272,545 - 11177 mRNA_2809 0.14 -0.7
272,657 + 11177 mRNA_2809 0.16 -0.6
272,671 - 11177 mRNA_2809 0.16 -1.1
272,703 + 11177 mRNA_2809 0.17 -0.1
272,955 - 11177 mRNA_2809 0.20 0.3
277,360 + 11177 mRNA_2809 0.83 1.9
278,171 - -0.4
278,394 + -1.5
278,467 + -0.7
278,552 + 0.1
278,665 + 0.9
278,689 + -0.9
278,703 + 0.8