Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2721

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2720: 11088 - Hypothetical Protein, at 76182 to 76700 11088 mRNA_2721: 11089 - BLAST metallophosphoesterase domain-containing protein [Muc..., at 76876 to 78981 11089 mRNA_2722: 11090 - KOG4117 Heat shock factor binding protein, at 79182 to 79739 11090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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76,148 + -1.2
76,294 - 11088 mRNA_2720 0.22 0.8
76,315 + 11088 mRNA_2720 0.26 0.2
76,317 - 11088 mRNA_2720 0.26 1.7
76,421 - 11088 mRNA_2720 0.46 -0.4
76,458 + 11088 mRNA_2720 0.53 -1.2
76,459 - 11088 mRNA_2720 0.53 0.4
76,460 - 11088 mRNA_2720 0.54 -0.6
76,468 + 11088 mRNA_2720 0.55 0.9
76,507 + 11088 mRNA_2720 0.63 -0.2
76,573 - 11088 mRNA_2720 0.75 -0.5
76,605 - 11088 mRNA_2720 0.82 -0.4
76,696 - 1.7
76,720 + -0.9
76,720 + -1.5
76,739 + -0.7
76,777 - 0.7
76,782 - 0.5
76,789 + -1.5
76,799 - 2.0
76,809 + 1.1
76,816 - 0.1
76,829 - -1.1
76,893 - -1.9
76,905 + -1.2
76,952 - 0.4
76,965 + 0.1
77,142 + 11089 mRNA_2721 0.13 -0.4
77,187 + 11089 mRNA_2721 0.15 0.8
77,189 + 11089 mRNA_2721 0.15 -0.7
77,306 + 11089 mRNA_2721 0.20 -0.5
77,360 + 11089 mRNA_2721 0.23 -0.1
77,363 - 11089 mRNA_2721 0.23 -0.1
77,365 - 11089 mRNA_2721 0.23 1.0
77,382 + 11089 mRNA_2721 0.24 -0.7
77,597 - 11089 mRNA_2721 0.34 -0.7
78,080 + 11089 mRNA_2721 0.57 -0.1
78,338 + 11089 mRNA_2721 0.69 -0.9
78,389 - 11089 mRNA_2721 0.72 -1.1
78,518 - 11089 mRNA_2721 0.78 -0.5
78,956 - -0.2
78,958 - -0.2
78,980 + -0.3
79,093 - -1.2
79,681 + 11090 mRNA_2722 0.89 -0.4
79,722 - -2.3