Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2694

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18614 to 20530 11061 mRNA_2694: 11062 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF54695, at 20926 to 22511 11062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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20,002 + 11061 mRNA_2693 0.72 -0.3
20,007 + 11061 mRNA_2693 0.73 0.2
20,031 - 11061 mRNA_2693 0.74 0.4
20,074 + 11061 mRNA_2693 0.76 0.1
20,079 + 11061 mRNA_2693 0.76 1.1
20,123 + 11061 mRNA_2693 0.79 -0.4
20,310 - 11061 mRNA_2693 0.88 1.2
20,466 - 0.7
20,610 - 0.4
20,614 - 0.2
20,616 - 0.9
20,617 - 0.7
20,628 + -0.8
20,664 + -0.3
20,707 + 0.1
20,724 + -1.0
20,765 - 0.9
20,784 - -1.6
20,792 - -0.3
20,922 - -0.7
20,923 + -0.2
20,930 + -1.2
20,935 + -2.6
20,959 - -0.2
20,959 - -0.9
20,960 - -0.3
20,960 - -0.1
20,966 + -0.8
20,972 - 0.5
20,979 + 0.2
21,305 - 11062 mRNA_2694 0.24 -1.2
21,312 + 11062 mRNA_2694 0.24 -0.2
21,358 + 11062 mRNA_2694 0.27 -0.4
21,372 - 11062 mRNA_2694 0.28 0.0
21,834 - 11062 mRNA_2694 0.57 -1.1
22,077 + 11062 mRNA_2694 0.73 -0.1
22,194 + 11062 mRNA_2694 0.80 -0.5
22,197 - 11062 mRNA_2694 0.80 0.3
22,234 - 11062 mRNA_2694 0.82 -1.6
22,318 + 11062 mRNA_2694 0.88 0.4
22,460 - -0.8
22,535 + -0.8
22,547 - 0.8
22,584 + -0.9
22,644 - 0.4
22,653 - -0.3
22,664 + 0.4
22,664 + -0.6
22,669 - 1.2
22,682 + -0.2
22,826 - -0.2
22,834 + -0.5
22,975 - -0.8
22,975 - -1.1
23,076 + -1.1
23,235 - -0.7
23,391 - -1.7
23,404 - -0.6
23,406 - -0.2
23,412 - -1.7
23,429 + 0.5
23,435 - 0.5