Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2578

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2577: 10945 - HMMPfam-Protein of unknown function (DUF3767)-PF12597, at 482367 to 483175 10945 mRNA_2578: 10946 - KOG3574 Acetyl-CoA transporter, at 483636 to 486060 10946 mRNA_2579: 10947 - K10597 UBE4B, UFD2 ubiquitin conjugation factor E4 B, at 486195 to 490612 10947

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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483,222 + 0.6
483,389 - -0.1
483,527 + -0.7
483,629 + 1.9
483,887 - 10946 mRNA_2578 0.10 -0.5
484,079 - 10946 mRNA_2578 0.18 1.0
484,120 - 10946 mRNA_2578 0.20 -0.3
484,390 + 10946 mRNA_2578 0.31 0.5
484,439 - 10946 mRNA_2578 0.33 -0.8
484,508 + 10946 mRNA_2578 0.36 0.5
484,538 - 10946 mRNA_2578 0.37 1.3
484,539 + 10946 mRNA_2578 0.37 0.5
484,553 + 10946 mRNA_2578 0.38 -0.8
484,662 + 10946 mRNA_2578 0.42 -0.4
484,712 + 10946 mRNA_2578 0.44 -0.8
484,834 - 10946 mRNA_2578 0.49 -0.2
485,052 - 10946 mRNA_2578 0.58 -0.1
485,097 + 10946 mRNA_2578 0.60 0.1
485,097 + 10946 mRNA_2578 0.60 0.2
485,834 + -0.2
485,845 + 0.4
485,862 - -1.1
485,987 - -1.0
485,992 + -0.2
486,000 + -0.4
486,000 + -0.4
486,117 - 0.5
486,121 + 0.2
486,124 - 1.9
486,151 - 0.2
486,194 - -0.3
486,431 - 0.0
486,604 + 0.0
486,693 + 10947 mRNA_2579 0.11 -0.2
486,765 + 10947 mRNA_2579 0.13 0.3
487,035 - 10947 mRNA_2579 0.19 -0.1