Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2576

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479011 to 480812 10943 mRNA_2576: 10944 - Hypothetical Protein, at 480885 to 482213 10944 mRNA_2577: 10945 - HMMPfam-Protein of unknown function (DUF3767)-PF12597, at 482367 to 483175 10945

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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479,981 - 10943 mRNA_2575 0.54 -0.3
480,011 + 10943 mRNA_2575 0.55 -0.2
480,273 - 10943 mRNA_2575 0.70 -1.2
480,276 + 10943 mRNA_2575 0.70 0.8
480,418 - 10943 mRNA_2575 0.78 -0.8
480,431 - 10943 mRNA_2575 0.79 -0.4
480,441 + 10943 mRNA_2575 0.79 0.4
480,529 - 10943 mRNA_2575 0.84 0.0
480,584 - 10943 mRNA_2575 0.87 -0.9
480,659 - 1.9
480,739 - -0.0
480,746 + -0.7
480,749 - 0.7
480,754 - -0.3
480,761 + 1.0
480,811 - -2.1
480,860 + -1.3
480,874 - -1.6
480,879 + 0.2
480,884 + -0.6
480,982 - -1.1
481,038 + 10944 mRNA_2576 0.12 -0.7
481,041 + 10944 mRNA_2576 0.12 -0.7
481,051 + 10944 mRNA_2576 0.12 0.8
481,131 - 10944 mRNA_2576 0.19 -0.1
481,160 + 10944 mRNA_2576 0.21 1.2
481,215 + 10944 mRNA_2576 0.25 1.9
481,234 - 10944 mRNA_2576 0.26 -1.0
481,243 - 10944 mRNA_2576 0.27 -0.3
481,291 + 10944 mRNA_2576 0.31 -2.1
481,298 - 10944 mRNA_2576 0.31 -0.2
481,336 + 10944 mRNA_2576 0.34 0.2
481,527 - 10944 mRNA_2576 0.48 1.3
481,967 + 10944 mRNA_2576 0.81 1.7
482,058 - 10944 mRNA_2576 0.88 -0.4
482,072 + 10944 mRNA_2576 0.89 -1.3
482,330 + -0.4
482,369 + -2.4
482,372 - 0.5
482,479 - 10945 mRNA_2577 0.14 -0.2