Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2552

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2551: 10919 - K00799 GST, gst glutathione S-transferase, at 426245 to 427122 10919 mRNA_2552: 10920 - Hypothetical Protein, at 428082 to 428710 10920 mRNA_2553: 10921 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 428822 to 431100 10921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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427,455 + 0.0
427,482 - 1.4
427,493 - -1.4
427,494 - 0.4
427,507 + -0.1
427,516 - -0.7
427,625 - -1.3
427,744 - -1.1
427,756 - -0.1
427,756 - 0.2
427,761 + -0.2
427,779 - 0.1
427,783 - 0.6
427,795 + -0.2
428,026 + -2.0
428,040 + 0.2
428,086 + 0.3
428,105 - 1.0
428,121 - 0.6
428,237 - 10920 mRNA_2552 0.25 1.5
428,265 + 10920 mRNA_2552 0.29 0.8
428,265 - 10920 mRNA_2552 0.29 -0.4
428,384 - 10920 mRNA_2552 0.48 0.0
428,437 + 10920 mRNA_2552 0.56 -0.4
428,553 + 10920 mRNA_2552 0.75 -0.8
428,567 + 10920 mRNA_2552 0.77 -0.3
428,821 + 0.6
429,016 - -0.2
429,264 - 10921 mRNA_2553 0.19 -0.2
429,270 - 10921 mRNA_2553 0.20 -0.2
429,319 - 10921 mRNA_2553 0.22 -0.4
429,520 - 10921 mRNA_2553 0.31 0.1
429,577 - 10921 mRNA_2553 0.33 0.1