Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2533

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2532: 10900 - KOG2961 Predicted hydrolase (HAD superfamily), at 375571 to 377208 10900 mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377456 to 384141 10901 mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384523 to 387549 10902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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376,774 + 10900 mRNA_2532 0.73 0.2
376,809 + 10900 mRNA_2532 0.76 0.2
377,103 + -0.9
377,194 - -1.0
377,214 + -0.8
377,248 - 0.4
377,275 - -0.8
377,475 - -0.9
377,549 - 0.1
377,569 + 0.2
377,841 - -0.7
377,960 - -2.8
378,173 + 10901 mRNA_2533 0.11 -0.8
378,387 + 10901 mRNA_2533 0.14 -0.0
378,910 + 10901 mRNA_2533 0.22 1.2
379,323 + 10901 mRNA_2533 0.28 1.5
379,554 + 10901 mRNA_2533 0.31 -0.1
379,886 + 10901 mRNA_2533 0.36 -0.1
380,269 + 10901 mRNA_2533 0.42 -0.2
380,382 + 10901 mRNA_2533 0.44 -0.6
380,886 + 10901 mRNA_2533 0.51 0.5
381,339 - 10901 mRNA_2533 0.58 1.0
381,400 - 10901 mRNA_2533 0.59 0.1
381,516 + 10901 mRNA_2533 0.61 0.2
381,786 - 10901 mRNA_2533 0.65 -1.3
382,344 + 10901 mRNA_2533 0.73 -0.9
382,569 - 10901 mRNA_2533 0.76 1.5
382,622 + 10901 mRNA_2533 0.77 -0.2
382,795 - 10901 mRNA_2533 0.80 -0.6
383,041 - 10901 mRNA_2533 0.84 -0.7
383,205 + 10901 mRNA_2533 0.86 -0.0
383,234 - 10901 mRNA_2533 0.86 0.6
383,639 - 0.8
383,775 + 0.2
383,796 + -0.5
384,097 - -0.7
384,218 - -0.2
384,234 - -0.5
384,238 + 0.6
384,340 - 0.2
384,379 - 0.1
384,383 - -2.8
384,392 + -1.4
384,441 + -1.4
384,530 - 1.3
384,549 + -0.4
384,865 - 10902 mRNA_2534 0.11 0.7
385,004 + 10902 mRNA_2534 0.16 -0.2
385,093 - 10902 mRNA_2534 0.19 0.6