Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2518

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337169 to 339877 10885 mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340022 to 341494 10886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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339,151 - 10885 mRNA_2517 0.73 1.3
339,157 - 10885 mRNA_2517 0.73 0.2
339,170 - 10885 mRNA_2517 0.74 -0.4
339,177 + 10885 mRNA_2517 0.74 -1.4
339,185 + 10885 mRNA_2517 0.74 0.3
339,218 - 10885 mRNA_2517 0.76 0.3
339,222 + 10885 mRNA_2517 0.76 -1.2
339,224 - 10885 mRNA_2517 0.76 0.5
339,230 + 10885 mRNA_2517 0.76 0.7
339,230 - 10885 mRNA_2517 0.76 -0.4
339,234 + 10885 mRNA_2517 0.76 -0.6
339,239 - 10885 mRNA_2517 0.76 -1.0
339,242 - 10885 mRNA_2517 0.77 -0.1
339,243 + 10885 mRNA_2517 0.77 1.1
339,252 - 10885 mRNA_2517 0.77 -0.3
339,279 + 10885 mRNA_2517 0.78 0.3
339,367 - 10885 mRNA_2517 0.81 -0.3
339,368 - 10885 mRNA_2517 0.81 0.8
339,381 - 10885 mRNA_2517 0.82 -1.1
339,491 + 10885 mRNA_2517 0.86 -0.0
339,798 - -2.1
339,909 - -0.9
339,938 + -0.1
339,939 + -0.5
339,942 - -0.0
339,946 - 0.7
339,947 + -0.7
339,951 + -1.2
339,951 - -0.3
339,953 + -1.4
339,959 + -0.5
339,963 + 0.0
340,104 - -0.5
340,112 + -0.3
340,147 + 1.4
340,244 + 10886 mRNA_2518 0.15 -0.4
340,259 + 10886 mRNA_2518 0.16 0.6
340,408 + 10886 mRNA_2518 0.26 -0.5
340,537 + 10886 mRNA_2518 0.35 -0.2
340,822 - 10886 mRNA_2518 0.54 0.6
341,406 - -1.2
341,697 - 0.5
341,697 + 1.6
341,703 + 0.3
341,992 + -0.3
342,006 + 1.3
342,029 - -0.4
342,076 - -0.1
342,085 - -0.6
342,087 - -1.1
342,094 + -0.1
342,147 + -0.2
342,165 - -0.0
342,167 + 0.0
342,168 + 0.7
342,179 - -1.7
342,191 - -0.0
342,198 + 0.5
342,214 - -1.2
342,217 - -1.2
342,293 - -0.1
342,298 - -0.2
342,298 - -0.5
342,302 + -1.2
342,302 - 0.4
342,302 + 2.1
342,337 + 0.0
342,341 + -0.3
342,341 + 0.5
342,344 + -1.9
342,355 + -0.7
342,430 + -1.4