Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2453

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165209 to 166286 10820 mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166755 to 168701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169687 to 172594 10822

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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165,847 - 10820 mRNA_2452 0.59 0.3
165,917 - 10820 mRNA_2452 0.66 -0.1
166,296 - -1.3
166,605 - -0.8
167,048 + 10821 mRNA_2453 0.15 -0.1
167,311 - 10821 mRNA_2453 0.29 0.6
167,484 + 10821 mRNA_2453 0.37 -0.7
167,635 + 10821 mRNA_2453 0.45 0.2
167,744 + 10821 mRNA_2453 0.51 -1.0
167,785 + 10821 mRNA_2453 0.53 -0.1
167,899 - 10821 mRNA_2453 0.59 -0.0
168,065 - 10821 mRNA_2453 0.67 -0.3
168,367 - 10821 mRNA_2453 0.83 0.5
168,389 + 10821 mRNA_2453 0.84 0.8
168,524 + 0.0
168,613 - -0.5
168,634 - -0.7
168,649 - -0.6
168,659 - 1.3
168,737 + -0.1
168,756 - -1.1
168,778 - -1.4
168,790 + -0.3
168,792 + -0.2
168,794 + -0.7
168,797 + -0.7
168,797 + 1.0
168,802 - -0.9
168,804 + -1.5
168,808 - -0.4
168,818 + -1.0
168,819 - 0.5
168,821 - 1.1
168,822 + -0.3
168,824 + -0.4
168,824 + 0.3
168,840 + -0.5
168,846 + -1.0
168,861 - 0.1
168,883 - -0.9
168,912 - -0.1
168,921 + -1.6
168,925 - -0.1
168,944 + -0.2
168,949 + -1.1
168,953 + 0.0
168,953 - -0.2
168,965 - 1.1
168,965 + -0.6
168,967 + 0.3
168,973 - -2.7
169,002 - 0.2
169,006 - -0.1
169,009 - -0.5
169,010 - -0.4
169,012 + -0.2
169,013 - -0.2
169,019 + -0.2
169,023 - -1.9
169,025 - 0.3
169,025 - 0.1
169,026 + -0.6
169,027 - 0.0
169,034 + 0.2
169,036 - -0.7
169,041 - 0.7
169,041 - 0.3
169,046 + 0.2
169,048 - -0.9
169,048 - -0.2
169,050 - -0.4
169,053 + -0.2
169,053 + 0.5
169,057 - 0.6
169,059 + -0.1
169,089 - 0.8
169,090 - -0.3
169,097 - 0.9
169,101 + -1.6
169,101 + -0.6
169,102 + -0.5
169,103 + -0.0
169,105 + -0.1
169,106 + -0.0
169,107 + -1.0
169,107 - 0.7
169,108 + -0.8
169,110 - -0.6
169,119 - 0.3
169,124 + -0.4
169,138 + -0.4
169,155 - 0.0
169,172 - 1.1
169,178 + -1.2
169,179 - -0.7
169,184 - -1.7
169,185 + 0.6
169,198 + 0.6
169,211 - 0.1
169,291 - 0.2
169,300 + -0.1
169,450 + -0.6
169,683 + 0.8