Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2426

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91083 to 92591 10793 mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92965 to 95698 10794 mRNA_2427: 10795 - Hypothetical Protein, at 96248 to 96907 10795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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92,662 - -0.4
92,662 - -0.5
92,667 + 0.4
92,681 + 1.0
92,783 - -1.7
92,788 - -0.3
92,828 - -1.0
92,985 + -0.2
93,022 + -0.0
93,118 - 0.7
93,523 + 10794 mRNA_2426 0.20 -0.2
93,553 + 10794 mRNA_2426 0.22 0.2
93,680 + 10794 mRNA_2426 0.26 -0.6
93,708 - 10794 mRNA_2426 0.27 0.2
93,774 + 10794 mRNA_2426 0.30 1.2
93,800 + 10794 mRNA_2426 0.31 -0.4
94,789 + 10794 mRNA_2426 0.67 -0.3
94,905 + 10794 mRNA_2426 0.71 0.2
95,274 - 10794 mRNA_2426 0.84 -0.3
95,336 - 10794 mRNA_2426 0.87 1.3
95,671 - -0.5
95,787 - 1.6
95,806 + 1.1
95,828 + -0.3
95,971 - -0.3
95,971 + -0.6
96,107 + -0.1
96,148 - -0.3
96,152 - 0.5
96,247 - 1.4
96,267 - -0.5
96,272 + -0.5
96,278 + -0.3
96,280 - -0.4
96,286 - 0.5
96,299 - 1.6
96,308 - -0.2
96,317 - 10795 mRNA_2427 0.10 0.3
96,328 + 10795 mRNA_2427 0.12 0.6
96,412 + 10795 mRNA_2427 0.25 0.2
96,423 - 10795 mRNA_2427 0.27 0.4
96,453 + 10795 mRNA_2427 0.31 -0.1
96,513 - 10795 mRNA_2427 0.40 -0.5
96,535 + 10795 mRNA_2427 0.43 0.1
96,543 - 10795 mRNA_2427 0.45 0.0
96,547 - 10795 mRNA_2427 0.45 -0.4
96,548 + 10795 mRNA_2427 0.45 -0.5
96,566 + 10795 mRNA_2427 0.48 -0.2
96,575 + 10795 mRNA_2427 0.50 -0.4
96,583 - 10795 mRNA_2427 0.51 0.2
96,583 + 10795 mRNA_2427 0.51 0.1
96,584 + 10795 mRNA_2427 0.51 0.7
96,586 + 10795 mRNA_2427 0.51 -0.3
96,634 + 10795 mRNA_2427 0.58 -1.3
96,691 - 10795 mRNA_2427 0.67 0.3