Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2399

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24008 to 25280 10766 mRNA_2399: 10767 - Hypothetical Protein, at 25510 to 29581 10767 mRNA_2400: 10768 - Hypothetical Protein, at 29855 to 31003 10768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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24,579 - 10766 mRNA_2398 0.45 0.2
24,581 - 10766 mRNA_2398 0.45 0.5
24,720 - 10766 mRNA_2398 0.56 0.2
24,750 + 10766 mRNA_2398 0.58 -0.3
24,773 + 10766 mRNA_2398 0.60 0.8
24,856 - 10766 mRNA_2398 0.67 -0.0
24,895 + 10766 mRNA_2398 0.70 -0.3
24,895 + 10766 mRNA_2398 0.70 -0.1
25,005 - 10766 mRNA_2398 0.78 -1.1
25,028 + 10766 mRNA_2398 0.80 -0.9
25,164 + -0.0
25,306 + 0.0
25,422 + -0.8
25,454 - 0.5
25,493 - -0.4
25,693 + 0.4
25,696 - 0.1
25,750 - -1.0
25,857 + 2.0
26,023 + 10767 mRNA_2399 0.13 1.5
26,450 - 10767 mRNA_2399 0.23 0.5
26,489 + 10767 mRNA_2399 0.24 -0.3
26,591 - 10767 mRNA_2399 0.27 0.8
26,591 - 10767 mRNA_2399 0.27 -0.0
26,617 - 10767 mRNA_2399 0.27 -0.2
26,824 - 10767 mRNA_2399 0.32 -0.6
26,824 - 10767 mRNA_2399 0.32 -0.1
26,863 + 10767 mRNA_2399 0.33 -1.2
26,971 + 10767 mRNA_2399 0.36 -1.5
27,089 + 10767 mRNA_2399 0.39 0.6
27,130 - 10767 mRNA_2399 0.40 -0.3
27,598 - 10767 mRNA_2399 0.51 -0.6
27,674 - 10767 mRNA_2399 0.53 -0.5
27,819 + 10767 mRNA_2399 0.57 -0.1
27,823 - 10767 mRNA_2399 0.57 0.0
27,849 + 10767 mRNA_2399 0.57 -0.1
27,934 - 10767 mRNA_2399 0.60 -1.7
27,943 + 10767 mRNA_2399 0.60 -1.7
27,946 - 10767 mRNA_2399 0.60 0.3
27,947 + 10767 mRNA_2399 0.60 -0.3
28,024 - 10767 mRNA_2399 0.62 0.2
28,030 + 10767 mRNA_2399 0.62 -0.6
28,161 - 10767 mRNA_2399 0.65 -1.1
28,542 + 10767 mRNA_2399 0.74 -0.6
28,759 + 10767 mRNA_2399 0.80 1.8
29,022 + 10767 mRNA_2399 0.86 0.3
29,148 - 10767 mRNA_2399 0.89 0.9
29,148 - 10767 mRNA_2399 0.89 0.4
29,162 + 10767 mRNA_2399 0.90 -0.4
29,205 + 0.3
29,207 + -0.3
29,243 - 0.7
29,343 - -0.4
29,558 - -0.2
29,638 + -0.3
29,638 + -0.3
29,743 + -0.9
29,920 + 0.1
29,921 + 0.1
29,995 - 10768 mRNA_2400 0.12 0.9
29,997 + 10768 mRNA_2400 0.12 1.2
30,089 - 10768 mRNA_2400 0.20 -0.1
30,104 + 10768 mRNA_2400 0.22 0.5
30,125 + 10768 mRNA_2400 0.23 -0.7
30,209 - 10768 mRNA_2400 0.31 0.1
30,209 - 10768 mRNA_2400 0.31 0.8
30,216 - 10768 mRNA_2400 0.31 -0.8
30,222 - 10768 mRNA_2400 0.32 -0.7
30,278 + 10768 mRNA_2400 0.37 -0.3
30,460 + 10768 mRNA_2400 0.53 -1.3
30,504 - 10768 mRNA_2400 0.56 -0.7
30,522 + 10768 mRNA_2400 0.58 0.5
30,534 - 10768 mRNA_2400 0.59 0.6
30,571 - 10768 mRNA_2400 0.62 -0.2