Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2395

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15133 to 16619 10762 mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16868 to 18999 10763 mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19108 to 21174 10764

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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16,094 + 10762 mRNA_2394 0.65 -1.0
16,110 - 10762 mRNA_2394 0.66 1.5
16,264 + 10762 mRNA_2394 0.76 0.0
16,274 - 10762 mRNA_2394 0.77 -0.0
16,317 + 10762 mRNA_2394 0.80 0.4
16,323 + 10762 mRNA_2394 0.80 -2.1
16,329 - 10762 mRNA_2394 0.80 -0.3
16,375 + 10762 mRNA_2394 0.84 -1.2
16,439 - 10762 mRNA_2394 0.88 1.4
16,469 + 10762 mRNA_2394 0.90 -0.8
16,561 + -0.3
16,563 - -0.5
16,580 + -0.6
16,625 + -0.2
16,696 - -2.2
16,724 + 0.5
16,850 + 0.3
16,869 - -1.2
16,870 + -0.7
16,874 + 0.1
16,911 - 1.8
16,914 - -0.1
16,919 + -1.3
17,000 - 0.6
17,036 + 0.4
17,198 + 10763 mRNA_2395 0.15 -0.5
17,273 + 10763 mRNA_2395 0.19 -0.2
17,431 - 10763 mRNA_2395 0.26 -0.1
17,446 - 10763 mRNA_2395 0.27 -1.0
17,449 - 10763 mRNA_2395 0.27 -0.5
17,455 + 10763 mRNA_2395 0.28 1.0
17,652 + 10763 mRNA_2395 0.37 -0.3
17,981 + 10763 mRNA_2395 0.52 -0.0
18,062 - 10763 mRNA_2395 0.56 0.6
18,209 - 10763 mRNA_2395 0.63 -0.8
18,268 - 10763 mRNA_2395 0.66 -0.0
18,279 - 10763 mRNA_2395 0.66 -0.6
18,408 - 10763 mRNA_2395 0.72 -0.5
18,411 + 10763 mRNA_2395 0.72 -0.5
18,500 + 10763 mRNA_2395 0.77 0.8
18,525 - 10763 mRNA_2395 0.78 0.8
18,585 - 10763 mRNA_2395 0.81 0.4
18,633 + 10763 mRNA_2395 0.83 -0.8
18,640 - 10763 mRNA_2395 0.83 -0.0
18,689 - 10763 mRNA_2395 0.85 -0.5
18,772 - 10763 mRNA_2395 0.89 0.0
18,798 + -0.3
19,076 + -1.0
19,087 - 0.5
19,228 + 0.6
19,244 - 0.5
19,352 + 10764 mRNA_2396 0.12 0.7
19,513 - 10764 mRNA_2396 0.20 0.4
19,518 + 10764 mRNA_2396 0.20 0.6
19,528 + 10764 mRNA_2396 0.20 0.7
19,571 - 10764 mRNA_2396 0.22 0.5
19,682 + 10764 mRNA_2396 0.28 0.2
19,813 - 10764 mRNA_2396 0.34 -0.4