Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2336

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648018 to 653331 10703 mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653967 to 656080 10704 mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656119 to 656520 10705

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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653,057 - 0.8
653,226 - -0.6
653,541 + -1.1
653,675 - 0.1
653,682 + -0.2
653,811 + -1.2
653,811 + -0.3
653,822 - 0.1
654,121 - -0.8
654,260 - 10704 mRNA_2336 0.14 0.8
654,536 - 10704 mRNA_2336 0.27 0.0
654,832 - 10704 mRNA_2336 0.41 0.4
655,016 + 10704 mRNA_2336 0.50 -0.3
655,397 - 10704 mRNA_2336 0.68 0.2
655,696 + 10704 mRNA_2336 0.82 -0.9
655,989 + 0.5
656,032 - 0.2
656,275 + 10705 mRNA_2337 0.39 -1.4
656,277 - 10705 mRNA_2337 0.39 1.5
656,283 + 10705 mRNA_2337 0.41 -0.0
656,284 - 10705 mRNA_2337 0.41 -0.1
656,373 - 10705 mRNA_2337 0.63 1.0
656,417 - 10705 mRNA_2337 0.74 0.4
656,417 - 10705 mRNA_2337 0.74 0.3
656,430 + 10705 mRNA_2337 0.77 -0.5
656,430 - 10705 mRNA_2337 0.77 -0.4
656,441 + 10705 mRNA_2337 0.80 1.2
656,474 + 10705 mRNA_2337 0.88 0.2
656,589 + 0.1
656,589 - 0.4
656,591 - -0.3
656,606 + -0.2
656,612 + 0.5
656,626 + 0.2
656,629 - 1.6
656,629 + -0.6
656,637 - -0.6
656,663 + -0.1
656,672 + -0.8
656,672 - -0.8
656,679 - -0.6
656,682 + 1.2
656,688 + -2.2
656,724 + 0.5
656,742 + -0.0
656,755 - -0.4
656,778 - 0.4
656,791 - -0.7
656,816 - -0.4
656,816 - -0.3
656,832 + 0.3
656,856 - 0.0
656,890 - -1.0
656,899 - -0.2
656,901 - 0.7
656,921 - -0.7
656,923 - -0.3
656,923 - 0.1
656,925 - 0.0
656,930 - -0.7
656,945 + 0.5
656,960 + 0.0
656,960 - 1.6
656,961 + -0.6
656,978 + -0.3
656,978 - 0.3
656,980 - -0.3
656,987 - -0.8
656,990 + 0.1
656,992 - -0.5
656,997 - -0.3
657,029 - 0.1
657,039 + -0.5
657,067 - 0.0
657,077 + -0.2