Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2307

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2306: 10674 - HMMPfam-ATP synthase complex subunit h-PF10775, at 570737 to 571864 10674 mRNA_2307: 10675 - HMMPfam-Mitochondrial ATPase inhibitor, IATP-PF04568,SUPERFAMILY--SSF64602, at 572291 to 573066 10675 mRNA_2308: 10676 - ProSiteProfiles-VWFA domain profile.-PS50234,SUPERFAMILY--SSF53300, at 573284 to 575347 10676

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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571,899 + -0.5
571,916 - -0.3
571,919 - -0.3
571,920 - 1.1
571,922 + 1.4
571,930 - -0.7
572,085 - 0.4
572,087 + -0.4
572,090 + -0.5
572,090 + 0.8
572,099 - 0.6
572,100 - -2.0
572,103 - 0.1
572,104 - -0.3
572,105 + 0.0
572,106 + -0.9
572,106 + -0.5
572,109 + 0.2
572,227 + 0.8
572,228 + 0.1
572,230 - 1.5
572,232 + 0.2
572,241 + -1.8
572,256 - 0.2
572,291 + 1.5
572,363 + 0.9
572,416 + 10675 mRNA_2307 0.16 1.6
572,417 + 10675 mRNA_2307 0.16 -1.5
572,421 - 10675 mRNA_2307 0.17 0.5
572,423 - 10675 mRNA_2307 0.17 -0.2
572,431 - 10675 mRNA_2307 0.18 1.0
572,441 + 10675 mRNA_2307 0.19 0.7
572,449 + 10675 mRNA_2307 0.20 -0.3
572,469 + 10675 mRNA_2307 0.23 0.5
572,666 - 10675 mRNA_2307 0.48 -0.4
572,800 + 10675 mRNA_2307 0.66 0.1
572,979 - 10675 mRNA_2307 0.89 0.2
573,011 - -0.4
573,132 + 0.0
573,138 - -0.2
573,138 + 0.6
573,178 + -1.3
573,180 - -0.0
573,181 + -0.5
573,183 + -0.6
573,189 + 0.4
573,189 + -1.0
573,192 - -0.3
573,196 - -1.3
573,198 - -0.2
573,198 + -0.6
573,199 + -0.0
573,203 - -1.0
573,206 + -0.2
573,212 + -0.8
573,214 - 0.1
573,220 - 0.5
573,230 + 1.0
573,233 + -0.9
573,236 - 0.6
573,236 + -0.6
573,248 - -0.0
573,338 - 1.1
573,346 - -0.1
573,363 + 0.4
573,373 - -0.3
573,376 + -3.0
573,487 - -0.4
573,496 - 10676 mRNA_2308 0.10 1.2
573,501 - 10676 mRNA_2308 0.11 -1.0
573,506 - 10676 mRNA_2308 0.11 0.2
573,519 + 10676 mRNA_2308 0.11 0.4
573,600 - 10676 mRNA_2308 0.15 0.3
573,665 - 10676 mRNA_2308 0.18 -0.1