Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2297

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549665 to 551990 10664 mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552680 to 555232 10665 mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555441 to 556485 10666

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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552,154 + -0.6
552,155 + 0.0
552,288 - -1.5
552,292 + -0.2
552,328 + 0.3
552,430 - -1.4
552,442 - 0.3
552,444 - 0.2
552,449 - 0.3
552,450 - -0.3
552,460 + -0.6
552,462 - 0.4
552,467 + 1.3
552,568 + 1.5
552,590 + -1.5
552,590 + 1.3
552,599 - -1.0
552,609 + -0.2
552,654 + 0.7
552,733 + -1.2
552,774 + 0.3
552,893 - 1.7
553,042 - 10665 mRNA_2297 0.14 -0.3
553,197 - 10665 mRNA_2297 0.20 0.1
553,312 - 10665 mRNA_2297 0.25 0.1
553,351 - 10665 mRNA_2297 0.26 0.1
553,475 - 10665 mRNA_2297 0.31 -0.5
553,953 + 10665 mRNA_2297 0.50 -0.5
554,045 - 10665 mRNA_2297 0.53 1.3
554,322 + 10665 mRNA_2297 0.64 0.0
555,638 + 10666 mRNA_2298 0.19 -0.4
555,642 - 10666 mRNA_2298 0.19 -0.2
555,653 - 10666 mRNA_2298 0.20 -2.1
555,653 + 10666 mRNA_2298 0.20 0.0