Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2294

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2293: 10661 - BLAST splicing arginine serine-rich 12 [Moesziomyces an..., at 546142 to 547358 10661 mRNA_2294: 10662 - KOG4131 Ngg1-interacting factor 3 protein NIF3L1, at 547521 to 548816 10662 mRNA_2295: 10663 - BLAST CsbD-like [Xanthophyllomyces dendrorhous], at 548940 to 549587 10663 mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549665 to 551990 10664

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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546,565 + 10661 mRNA_2293 0.35 -0.5
546,599 - 10661 mRNA_2293 0.38 1.1
546,853 + 10661 mRNA_2293 0.58 -1.1
547,303 + -0.5
547,304 - 0.3
547,307 + -0.8
547,309 + 0.1
547,325 + 1.3
547,453 - -0.7
547,599 + -0.2
547,602 + 0.7
547,874 + 10662 mRNA_2294 0.27 -1.9
547,891 - 10662 mRNA_2294 0.29 -2.1
547,898 + 10662 mRNA_2294 0.29 -1.1
547,913 - 10662 mRNA_2294 0.30 -1.3
548,063 + 10662 mRNA_2294 0.42 -0.1
548,318 - 10662 mRNA_2294 0.61 0.0
548,935 + -0.6
549,313 + 10663 mRNA_2295 0.58 -0.3
549,323 + 10663 mRNA_2295 0.59 0.1
549,325 - 10663 mRNA_2295 0.59 -0.8
549,335 + 10663 mRNA_2295 0.61 -1.6
549,335 - 10663 mRNA_2295 0.61 0.7
549,338 + 10663 mRNA_2295 0.61 -1.1
549,454 - 10663 mRNA_2295 0.79 0.4
549,488 + 10663 mRNA_2295 0.85 -0.6
549,505 - 10663 mRNA_2295 0.87 -1.2
549,635 - -0.2