Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2246

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2245: 10613 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 455190 to 456884 10613 mRNA_2246: 10614 - K00026 MDH2 malate dehydrogenase, at 457247 to 458914 10614 mRNA_2247: 10615 - Hypothetical Protein, at 459109 to 460029 10615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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456,870 - -1.2
456,985 - -0.5
457,022 - 1.0
457,023 - 0.1
457,055 + 0.2
457,062 + -0.5
457,192 - -0.4
457,279 + 1.3
457,307 + -0.6
457,335 - -0.2
457,975 + 10614 mRNA_2246 0.44 0.4
458,073 - 10614 mRNA_2246 0.50 -0.6
458,203 - 10614 mRNA_2246 0.57 0.2
458,210 + 10614 mRNA_2246 0.58 -0.3
458,365 + 10614 mRNA_2246 0.67 -1.2
458,367 + 10614 mRNA_2246 0.67 0.3
458,495 + 10614 mRNA_2246 0.75 -0.3
458,638 - 10614 mRNA_2246 0.83 -0.3
458,654 + 10614 mRNA_2246 0.84 -0.1
458,762 - 0.3
458,791 - 0.6
458,930 - -0.4
459,078 - -0.5
459,085 - -0.8
459,088 - -1.3
459,089 + 0.1
459,092 + 1.6
459,095 - -2.2
459,108 + -0.4
459,200 + 0.3
459,202 - 10615 mRNA_2247 0.10 0.1
459,210 - 10615 mRNA_2247 0.11 -0.2
459,217 - 10615 mRNA_2247 0.12 0.2
459,224 - 10615 mRNA_2247 0.12 -0.8
459,233 + 10615 mRNA_2247 0.13 -0.3
459,242 + 10615 mRNA_2247 0.14 0.6
459,251 + 10615 mRNA_2247 0.15 -0.1
459,384 - 10615 mRNA_2247 0.30 -0.4
459,392 - 10615 mRNA_2247 0.31 0.1
459,401 - 10615 mRNA_2247 0.32 -0.3
459,573 + 10615 mRNA_2247 0.50 0.6
459,708 - 10615 mRNA_2247 0.65 0.9
459,723 + 10615 mRNA_2247 0.67 -1.1
459,772 - 10615 mRNA_2247 0.72 -0.6