Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2241

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2240: 10608 - K13291 TUT terminal uridylyltransferase, at 440002 to 443977 10608 mRNA_2241: 10609 - K12572 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit 3, at 444470 to 447596 10609 mRNA_2242: 10610 - Hypothetical Protein, at 448063 to 449685 10610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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443,538 - 10608 mRNA_2240 0.89 -0.7
443,567 - 10608 mRNA_2240 0.90 -0.3
443,681 - -0.6
443,903 + 0.7
443,951 - -1.1
443,974 - -0.7
443,981 - -0.4
443,981 + -0.3
443,984 + 0.1
444,274 + 0.3
444,296 - -0.4
444,448 + 1.2
444,459 - 0.5
444,466 + 0.7
445,831 - 10609 mRNA_2241 0.44 -0.4
445,945 - 10609 mRNA_2241 0.47 0.9
446,035 + 10609 mRNA_2241 0.50 0.0
446,081 - 10609 mRNA_2241 0.52 -1.7
446,211 - 10609 mRNA_2241 0.56 -0.4
446,249 - 10609 mRNA_2241 0.57 -0.1
446,829 + 10609 mRNA_2241 0.75 0.9
447,221 - 10609 mRNA_2241 0.88 -0.6
447,245 - 10609 mRNA_2241 0.89 -0.3
447,345 - -0.3
447,532 - -0.1
447,548 - -0.7
447,585 + -0.3
447,666 + -0.6
447,666 + -0.3
447,667 - 0.0
447,669 + -0.8
447,671 - 1.8
447,683 - 0.3
447,689 - -0.3
447,800 + 0.2
447,808 + 0.2
447,811 - -1.7
447,840 - -1.0
447,884 + -1.2
447,892 + 0.2
447,928 + -0.5
448,015 - -0.8
448,031 - -0.1
448,043 - -0.4
448,044 + -0.1
448,044 - -0.2
448,053 - -0.3
448,073 + -1.1
448,183 + 1.3
448,184 + -0.1
448,210 + -0.6
448,217 + -0.2
448,240 - 10610 mRNA_2242 0.11 0.7
448,247 - 10610 mRNA_2242 0.11 0.6
448,329 - 10610 mRNA_2242 0.16 -1.2
448,335 + 10610 mRNA_2242 0.17 -0.0
448,339 - 10610 mRNA_2242 0.17 0.9
448,353 + 10610 mRNA_2242 0.18 0.9
448,353 + 10610 mRNA_2242 0.18 -0.2
448,358 - 10610 mRNA_2242 0.18 2.0
448,364 - 10610 mRNA_2242 0.19 -0.1
448,384 + 10610 mRNA_2242 0.20 0.9
448,403 - 10610 mRNA_2242 0.21 0.0
448,446 + 10610 mRNA_2242 0.24 -0.2
448,478 + 10610 mRNA_2242 0.26 -0.5
448,483 - 10610 mRNA_2242 0.26 -0.6
448,494 + 10610 mRNA_2242 0.27 0.6
448,497 - 10610 mRNA_2242 0.27 -0.4
448,502 + 10610 mRNA_2242 0.27 -1.1
448,507 + 10610 mRNA_2242 0.27 1.6