Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2201

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335567 to 339379 10568 mRNA_2201: 10569 - K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49, at 339616 to 341199 10569 mRNA_2202: 10570 - K00365 uaZ urate oxidase, at 341518 to 342881 10570

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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338,832 + 10568 mRNA_2200 0.86 -1.0
339,140 - 1.2
339,277 + -0.3
339,409 + -0.2
339,435 + 0.6
339,441 + 0.2
339,445 + 0.3
339,455 - 0.1
339,539 + -1.4
339,553 - -0.1
339,577 - -0.1
339,585 + -0.6
339,700 - -1.5
339,700 + -1.2
339,716 - -1.4
339,719 + 0.2
339,727 - 0.7
339,881 - 10569 mRNA_2201 0.17 0.1
339,897 + 10569 mRNA_2201 0.18 -1.7
339,911 + 10569 mRNA_2201 0.19 0.4
340,147 - 10569 mRNA_2201 0.34 -0.6
341,027 - 10569 mRNA_2201 0.89 -1.2
341,047 + 2.2
341,189 - 0.7
341,238 + 0.4
341,348 - 1.1
341,502 - 1.8
341,513 - -1.6
341,523 + -0.1
341,562 - -0.2
341,580 - -0.1
341,586 + -0.1
341,660 + 10570 mRNA_2202 0.10 -0.0
341,727 + 10570 mRNA_2202 0.15 -0.8
341,844 + 10570 mRNA_2202 0.24 0.4
341,909 + 10570 mRNA_2202 0.29 -1.7
341,924 + 10570 mRNA_2202 0.30 1.0
342,046 - 10570 mRNA_2202 0.39 -0.5
342,076 - 10570 mRNA_2202 0.41 0.1
342,162 - 10570 mRNA_2202 0.47 1.4