Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2193

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306918 to 310071 10560 mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310220 to 312834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313322 to 318107 10562

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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309,284 + 10560 mRNA_2192 0.75 -0.3
309,722 + 10560 mRNA_2192 0.89 -0.0
309,752 + 10560 mRNA_2192 0.90 0.6
309,856 - -1.5
309,903 + -1.1
310,050 + -0.1
310,157 - -1.0
310,358 + 0.3
310,371 + 0.6
310,733 + 10561 mRNA_2193 0.20 0.1
311,101 - 10561 mRNA_2193 0.34 -0.1
311,166 + 10561 mRNA_2193 0.36 -0.1
311,406 + 10561 mRNA_2193 0.45 0.5
311,427 - 10561 mRNA_2193 0.46 0.9
312,054 - 10561 mRNA_2193 0.70 0.5
312,469 - 10561 mRNA_2193 0.86 -0.3
312,482 + 10561 mRNA_2193 0.87 -0.7
312,584 - -0.0
312,626 + -0.2
312,631 + -0.8
312,724 - -0.1
312,759 - -0.4
312,787 - -0.0
312,918 + 0.5
312,919 - -0.5
312,919 - -0.2
312,925 + -0.5
312,925 - -0.0
312,933 + 0.1
312,933 + 1.0
312,935 - 1.1
312,936 + -0.2
312,938 - -0.4
312,938 - -0.0
312,940 + -0.4
312,945 + 0.2
312,945 + -0.7
312,945 + -1.0
312,947 + -0.2
312,951 + 0.3
312,955 - -0.2
312,960 - -0.7
312,961 + -0.6
312,961 + -0.5
312,965 + -0.9
312,969 - -0.2
312,971 + -0.0
312,975 - -1.0
312,987 - -0.6
312,988 - -0.3
312,988 + 0.5
312,989 + 1.9
312,996 + 0.6
312,997 - 0.1
313,019 + 0.7
313,099 - -0.6
313,112 + 0.6
313,113 + 0.0
313,122 + -1.4
313,133 + -2.3
313,199 - -0.2
313,201 - 0.3
313,203 + -0.9
313,206 - -1.0
313,349 - -0.7
313,508 - 0.4
313,515 + 0.8
313,516 - -0.8
313,697 + -1.5