Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2179

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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267,372 - -0.8
267,514 - 0.1
267,523 + 0.4
267,642 - 0.1
267,682 + 0.3
267,714 + -0.5
267,777 + 1.8
267,957 - -1.7
267,965 - 0.1
267,970 + -0.1
267,973 - -0.7
267,976 + 1.1
267,990 + -0.4
268,073 - -1.6
268,307 + 0.4
268,399 - 2.0
268,421 + -0.2
268,684 - -0.7
268,766 - 10547 mRNA_2179 0.11 1.0
268,873 - 10547 mRNA_2179 0.13 0.3
268,922 + 10547 mRNA_2179 0.14 -0.7
268,956 + 10547 mRNA_2179 0.14 0.3
269,052 + 10547 mRNA_2179 0.16 -1.5
269,436 - 10547 mRNA_2179 0.24 -0.4
269,682 - 10547 mRNA_2179 0.29 -1.6
269,710 - 10547 mRNA_2179 0.29 -0.2
269,727 - 10547 mRNA_2179 0.30 0.5
270,192 - 10547 mRNA_2179 0.39 -1.0
270,345 + 10547 mRNA_2179 0.42 -1.7
270,432 + 10547 mRNA_2179 0.43 -1.2
271,142 - 10547 mRNA_2179 0.57 -1.2
271,241 - 10547 mRNA_2179 0.59 -1.3
271,242 + 10547 mRNA_2179 0.59 -1.4
271,986 - 10547 mRNA_2179 0.74 -0.9
272,150 + 10547 mRNA_2179 0.77 0.3
272,414 + 10547 mRNA_2179 0.82 0.4
272,818 - -1.1
273,226 - -1.1
273,232 - -1.1
273,263 - -0.9
273,374 - -0.5
273,402 + -0.6
273,529 - -1.2
273,531 - -0.1
273,542 + -0.9
273,560 + 0.5
273,565 - 0.6
273,566 + -1.1
273,846 + -0.4
274,173 - 10548 mRNA_2180 0.10 -1.5
274,231 - 10548 mRNA_2180 0.13 0.2