Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2170

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2169: 10537 - Hypothetical Protein, at 239219 to 240668 10537 mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240753 to 243794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244214 to 249218 10539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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239,844 + 10537 mRNA_2169 0.43 2.8
239,905 - 10537 mRNA_2169 0.47 0.5
240,128 + 10537 mRNA_2169 0.63 -0.4
240,181 - 10537 mRNA_2169 0.66 -0.4
240,277 - 10537 mRNA_2169 0.73 0.2
240,336 - 10537 mRNA_2169 0.77 -1.2
240,438 - 10537 mRNA_2169 0.84 0.4
240,602 + -0.2
240,823 - -0.5
240,909 + 0.2
240,914 + -0.2
241,049 + -1.0
241,314 + 10538 mRNA_2170 0.18 -1.5
241,632 - 10538 mRNA_2170 0.29 -1.2
241,657 + 10538 mRNA_2170 0.30 -0.9
241,776 + 10538 mRNA_2170 0.34 0.0
241,777 - 10538 mRNA_2170 0.34 -0.2
242,348 - 10538 mRNA_2170 0.52 -1.1
242,386 - 10538 mRNA_2170 0.54 -0.2
242,556 + 10538 mRNA_2170 0.59 -0.1
242,568 + 10538 mRNA_2170 0.60 -1.4
242,807 + 10538 mRNA_2170 0.68 0.9
242,984 - 10538 mRNA_2170 0.73 -0.5
243,112 + 10538 mRNA_2170 0.78 -0.5
243,260 - 10538 mRNA_2170 0.82 -1.0
243,889 + -1.3
244,018 - -1.0
244,023 - 0.4
244,023 + 1.0
244,162 + -1.2
244,163 - 0.0
244,163 - -0.4
244,182 - 1.2
244,188 + -0.5
244,272 + 0.0
244,455 - -0.7
244,489 + 0.3
244,624 - 0.3
244,626 + 1.0